[MINC-users] mincnlm

[Vladimir S. FONOV]

Hello,

Try converting it to float before running minnlm (i.e mincreshape -float
<in> <out> )

On 16 May 2018 at 14:01, Louis Dieumegarde <
louis.dieumegarde at crulrg.ulaval.ca> wrote:

>    Bonjour,
>
>
>    We have a problem when using the mincnlm tool with mri_convert. Once
>    the denoised minc file is convert to MGZ, we have an intensity range of
>    -32768 to 32767.
>
>
>    I tried the no_scale flag without success. I tried the -odt flag, the
>    range become 0-255, but there is still the wide disparity between some
>    voxels in the lower vs upper range.
>
>
>    The denoised minc is ok when we use register or mincstats. Even when we
>    open directly the denoised minc in freeview, the problem appears.
>
>
>    Is there a conversion in the denoised tool that is not compatible with
>    freesurfer?
>
>
>    Thank you.
>
>
>    Louis Dieumegarde
>
>    Data scientist / Professionnel de recherche
>
>    Laboratoire Medics
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
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>



-- 
Best regards,

 Vladimir S. Fonov ~ vladimir <dot> fonov <at> gmail <dot> com