[MINC-users] mincbeast question

[Divya Bolar]

Thanks Vladimir, I will try that!
Div

On May 19, 2017, at 12:13 PM, Vladimir S. FONOV <vladimir.fonov at gmail.com> wrote:

> Try:
> 
> mincresample -nearest ./test.mnc -like /opt/minc/share/beast-library-1.1/intersection_mask.mnc test_beast.mnc
> 
> and then mincbeast on test_beast.mnc
> 
> On 2017-05-19 12:10 PM, Divya Bolar wrote:
>> Hi all!
>> 
>> I have a pretty basic question re: mincbeast; I am just trying to input a minc file and get the brain extracted output (with the same resolution etc).
>> 
>> I've tried various options, e.g.:
>> mincbeast /opt/minc/share/beast-library-1.1 ./test.mnc test2.mnc
>> and
>> mincbeast  -no_mask /opt/minc/share/beast-library-1.1 test_forMincbeast.mnc output.mnc
>> and
>> mincbeast  -same_resolution /opt/minc/share/beast-library-1.1 test_forMincbeast.mnc output.mnc
>> 
>> I always get the following error:
>> ERROR! Mask dimension does not match image dimension!
>> 
>> Any suggestions?
>> 
>> Thanks so much!
>> Div
>> 
>> P.S.  I have a small example data set (100K); can send personally, but I think is getting blocked by user list.
>> 
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> 
> 
> -- 
> Best regards,
> 
> Vladimir S. FONOV ~ vladimir.fonov <at> gmail.com
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