[MINC-users] Could NOT find JPEG (missing: JPEG_LIBRARY JPEG_INCLUDE_DIR)
Steffen Bollmann
stebollmann at gmail.com
Mon Feb 20 19:29:35 EST 2017
Dear Vladimir,
Thank you for you help. The sudo should have been obvious, but I did not
realize that I wasn't root anymore when running that :/
Do you think it would be helpful to provide a virtual machine with a
compiled version of MINC for people struggling with compiling minc?
Best
Steffen
2017-02-21 9:08 GMT+10:00 Vladimir S. FONOV <vladimir.fonov at gmail.com>:
> Hello,
>
> On 2017-02-20 12:18 AM, Steffen Bollmann wrote:
>
>> I tried compiling the develop branch and for 'make test' I get one error:
>>
>> 99% tests passed, 1 tests failed out of 104
>>
>> Total Test time (real) = 44.28 sec
>>
>> The following tests FAILED:
>> 104 - minctracc_bfgs_nonlinear (Failed)
>> Errors while running CTest
>> Makefile:72: recipe for target 'test' failed
>> make: *** [test] Error 8
>>
>
> You can ignore this one.
>
>
>
>>
>>
>> when I try to run 'make install', I get this error:
>>
>> Install the project...
>> -- Install configuration: "Release"
>> -- Installing: /opt/minc-itk4/./bin
>> CMake Error at cmake_install.cmake:36 (file):
>> file INSTALL cannot make directory "/opt/minc-itk4/./bin": No such file
>> or
>> directory
>>
>
> You don't have permission to create /opt/minc-itk4 (i.e run with sudo)
>
>
>
>
>>
>> Makefile:148: recipe for target 'install' failed
>> make: *** [install] Error 1
>>
>>
>> How can I solve this?
>>
>> Thank you and kind regards
>> Steffen
>>
>> 2017-02-18 15:50 GMT+10:00 Steffen Bollmann <stebollmann at gmail.com>:
>>
>> Dear Vladimir,
>>>
>>> Thankyou for your help. I installed these and it worked. The next error
>>> is
>>> the missing zlib version, which was already discussed on the list:
>>>
>>> src='http://zlib.net/zlib-1.2.8.tar.gz'
>>> dst='/home/minc/minc-toolkit-v2/build/ZLIB-prefix/src/zlib-
>>> 1.2.8.tar.gz'
>>> timeout='none'
>>> CMake Error at ZLIB-prefix/src/ZLIB-stamp/download-ZLIB.cmake:27
>>> (message):
>>> error: downloading 'http://zlib.net/zlib-1.2.8.tar.gz' failed
>>>
>>> status_code: 22
>>> status_string: "HTTP response code said error"
>>> log: Trying 69.73.132.10...
>>>
>>>
>>>
>>> Is there a fix for this in the stable branch or should I try to compile
>>> the develop branch where this has been fixed?
>>>
>>> Thank you
>>> Seffen
>>>
>>> 2017-02-18 1:27 GMT+10:00 Vladimir S. Fonov <vladimir.fonov at gmail.com>:
>>>
>>> Latest version of dcm2mnc needs libjpeg and libopenjpeg which need to be
>>>> present.
>>>>
>>>>
>>>> On 2017-02-17 04:05 AM, Steffen Bollmann wrote:
>>>>
>>>> Hi All,
>>>>>
>>>>> I try to install https://github.com/BIC-MNI/minc-toolkit-v2 by
>>>>> following
>>>>> the readme on an Ubuntu 16.04, but I get this error:
>>>>>
>>>>> cmake .. \
>>>>>
>>>>> -DCMAKE_BUILD_TYPE:STRING=Release \
>>>>>> -DCMAKE_INSTALL_PREFIX:PATH=/opt/minc/1.9.13 \
>>>>>> -DMT_BUILD_ABC:BOOL=ON \
>>>>>> -DMT_BUILD_ANTS:BOOL=ON \
>>>>>> -DMT_BUILD_C3D:BOOL=ON \
>>>>>> -DMT_BUILD_ELASTIX:BOOL=ON \
>>>>>> -DMT_BUILD_IM:BOOL=OFF \
>>>>>> -DMT_BUILD_ITK_TOOLS:BOOL=ON \
>>>>>> -DMT_BUILD_LITE:BOOL=OFF \
>>>>>> -DMT_BUILD_SHARED_LIBS:BOOL=ON \
>>>>>> -DMT_BUILD_VISUAL_TOOLS:BOOL=ON \
>>>>>> -DMT_USE_OPENMP:BOOL=ON \
>>>>>> -DUSE_SYSTEM_FFTW3D:BOOL=OFF \
>>>>>> -DUSE_SYSTEM_FFTW3F:BOOL=OFF \
>>>>>> -DUSE_SYSTEM_GLUT:BOOL=OFF \
>>>>>> -DUSE_SYSTEM_GSL:BOOL=OFF \
>>>>>> -DUSE_SYSTEM_HDF5:BOOL=OFF \
>>>>>> -DUSE_SYSTEM_ITK:BOOL=OFF \
>>>>>> -DUSE_SYSTEM_NETCDF:BOOL=OFF \
>>>>>> -DUSE_SYSTEM_NIFTI:BOOL=OFF \
>>>>>> -DUSE_SYSTEM_PCRE:BOOL=OFF \
>>>>>> -DUSE_SYSTEM_ZLIB:BOOL=OFF
>>>>>>
>>>>>> -- Could NOT find JPEG (missing: JPEG_LIBRARY JPEG_INCLUDE_DIR)
>>>>> HDF5_DIR=/home/minc/minc-toolkit-v2/build/external//opt/minc
>>>>> /1.9.13/share/cmake/hdf5
>>>>> HDF5_LIBRARY=/home/minc/minc-toolkit-v2/build/external//opt/
>>>>> minc/1.9.13/lib/libhdf5.so
>>>>> HDF5_CPP_LIBRARY=/home/minc/minc-toolkit-v2/build/external//
>>>>> opt/minc/1.9.13/lib/libhdf5_cpp.so
>>>>> HDF5_HL_LIBRARY=/home/minc/minc-toolkit-v2/build/external//o
>>>>> pt/minc/1.9.13/lib/libhdf5_hl.so
>>>>> HDF5_HL_CPP_LIBRARY=/home/minc/minc-toolkit-v2/build/externa
>>>>> l//opt/minc/1.9.13/lib/libhdf5_hl_cpp.so
>>>>> CMake Error: The following variables are used in this project, but they
>>>>> are
>>>>> set to NOTFOUND.
>>>>> Please set them or make sure they are set and tested correctly in the
>>>>> CMake
>>>>> files:
>>>>> JPEG_INCLUDE_DIR (ADVANCED)
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdi
>>>>> sp
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdi
>>>>> sp
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdi
>>>>> sp
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdi
>>>>> sp
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdi
>>>>> sp
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdi
>>>>> sp
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdi
>>>>> sp
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdi
>>>>> sp
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdi
>>>>> sp
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdi
>>>>> sp
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>> used as include directory in directory
>>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>>
>>>>> -- Configuring incomplete, errors occurred!
>>>>> See also "/home/minc/minc-toolkit-v2/build/CMakeFiles/CMakeOutput.log
>>>>> ".
>>>>> See also "/home/minc/minc-toolkit-v2/build/CMakeFiles/CMakeError.log".
>>>>>
>>>>> What am I doing wrong here :?
>>>>>
>>>>> Thanks
>>>>> Steffen
>>>>> _______________________________________________
>>>>> MINC-users at bic.mni.mcgill.ca
>>>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>>>>
>>>>>
>>>>> _______________________________________________
>>>> MINC-users at bic.mni.mcgill.ca
>>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>>>
>>>>
>>>
>>> _______________________________________________
>> MINC-users at bic.mni.mcgill.ca
>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>
>>
>
> --
> Best regards,
>
> Vladimir S. FONOV ~ vladimir.fonov <at> gmail.com
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>
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