[MINC-users] Could NOT find JPEG (missing: JPEG_LIBRARY JPEG_INCLUDE_DIR)
Steffen Bollmann
stebollmann at gmail.com
Mon Feb 20 20:01:27 EST 2017
Ok, a quick search later: A virtual machine with minc exists already :)
https://github.com/CobraLab/MINC-VM
Thank you
Best
Steffen
2017-02-21 10:29 GMT+10:00 Steffen Bollmann <stebollmann at gmail.com>:
> Dear Vladimir,
>
> Thank you for you help. The sudo should have been obvious, but I did not
> realize that I wasn't root anymore when running that :/
>
> Do you think it would be helpful to provide a virtual machine with a
> compiled version of MINC for people struggling with compiling minc?
>
> Best
> Steffen
>
> 2017-02-21 9:08 GMT+10:00 Vladimir S. FONOV <vladimir.fonov at gmail.com>:
>
>> Hello,
>>
>> On 2017-02-20 12:18 AM, Steffen Bollmann wrote:
>>
>>> I tried compiling the develop branch and for 'make test' I get one error:
>>>
>>> 99% tests passed, 1 tests failed out of 104
>>>
>>> Total Test time (real) = 44.28 sec
>>>
>>> The following tests FAILED:
>>> 104 - minctracc_bfgs_nonlinear (Failed)
>>> Errors while running CTest
>>> Makefile:72: recipe for target 'test' failed
>>> make: *** [test] Error 8
>>>
>>
>> You can ignore this one.
>>
>>
>>
>>>
>>>
>>> when I try to run 'make install', I get this error:
>>>
>>> Install the project...
>>> -- Install configuration: "Release"
>>> -- Installing: /opt/minc-itk4/./bin
>>> CMake Error at cmake_install.cmake:36 (file):
>>> file INSTALL cannot make directory "/opt/minc-itk4/./bin": No such
>>> file or
>>> directory
>>>
>>
>> You don't have permission to create /opt/minc-itk4 (i.e run with sudo)
>>
>>
>>
>>
>>>
>>> Makefile:148: recipe for target 'install' failed
>>> make: *** [install] Error 1
>>>
>>>
>>> How can I solve this?
>>>
>>> Thank you and kind regards
>>> Steffen
>>>
>>> 2017-02-18 15:50 GMT+10:00 Steffen Bollmann <stebollmann at gmail.com>:
>>>
>>> Dear Vladimir,
>>>>
>>>> Thankyou for your help. I installed these and it worked. The next error
>>>> is
>>>> the missing zlib version, which was already discussed on the list:
>>>>
>>>> src='http://zlib.net/zlib-1.2.8.tar.gz'
>>>> dst='/home/minc/minc-toolkit-v2/build/ZLIB-prefix/src/zlib-
>>>> 1.2.8.tar.gz'
>>>> timeout='none'
>>>> CMake Error at ZLIB-prefix/src/ZLIB-stamp/download-ZLIB.cmake:27
>>>> (message):
>>>> error: downloading 'http://zlib.net/zlib-1.2.8.tar.gz' failed
>>>>
>>>> status_code: 22
>>>> status_string: "HTTP response code said error"
>>>> log: Trying 69.73.132.10...
>>>>
>>>>
>>>>
>>>> Is there a fix for this in the stable branch or should I try to compile
>>>> the develop branch where this has been fixed?
>>>>
>>>> Thank you
>>>> Seffen
>>>>
>>>> 2017-02-18 1:27 GMT+10:00 Vladimir S. Fonov <vladimir.fonov at gmail.com>:
>>>>
>>>> Latest version of dcm2mnc needs libjpeg and libopenjpeg which need to be
>>>>> present.
>>>>>
>>>>>
>>>>> On 2017-02-17 04:05 AM, Steffen Bollmann wrote:
>>>>>
>>>>> Hi All,
>>>>>>
>>>>>> I try to install https://github.com/BIC-MNI/minc-toolkit-v2 by
>>>>>> following
>>>>>> the readme on an Ubuntu 16.04, but I get this error:
>>>>>>
>>>>>> cmake .. \
>>>>>>
>>>>>> -DCMAKE_BUILD_TYPE:STRING=Release \
>>>>>>> -DCMAKE_INSTALL_PREFIX:PATH=/opt/minc/1.9.13 \
>>>>>>> -DMT_BUILD_ABC:BOOL=ON \
>>>>>>> -DMT_BUILD_ANTS:BOOL=ON \
>>>>>>> -DMT_BUILD_C3D:BOOL=ON \
>>>>>>> -DMT_BUILD_ELASTIX:BOOL=ON \
>>>>>>> -DMT_BUILD_IM:BOOL=OFF \
>>>>>>> -DMT_BUILD_ITK_TOOLS:BOOL=ON \
>>>>>>> -DMT_BUILD_LITE:BOOL=OFF \
>>>>>>> -DMT_BUILD_SHARED_LIBS:BOOL=ON \
>>>>>>> -DMT_BUILD_VISUAL_TOOLS:BOOL=ON \
>>>>>>> -DMT_USE_OPENMP:BOOL=ON \
>>>>>>> -DUSE_SYSTEM_FFTW3D:BOOL=OFF \
>>>>>>> -DUSE_SYSTEM_FFTW3F:BOOL=OFF \
>>>>>>> -DUSE_SYSTEM_GLUT:BOOL=OFF \
>>>>>>> -DUSE_SYSTEM_GSL:BOOL=OFF \
>>>>>>> -DUSE_SYSTEM_HDF5:BOOL=OFF \
>>>>>>> -DUSE_SYSTEM_ITK:BOOL=OFF \
>>>>>>> -DUSE_SYSTEM_NETCDF:BOOL=OFF \
>>>>>>> -DUSE_SYSTEM_NIFTI:BOOL=OFF \
>>>>>>> -DUSE_SYSTEM_PCRE:BOOL=OFF \
>>>>>>> -DUSE_SYSTEM_ZLIB:BOOL=OFF
>>>>>>>
>>>>>>> -- Could NOT find JPEG (missing: JPEG_LIBRARY JPEG_INCLUDE_DIR)
>>>>>> HDF5_DIR=/home/minc/minc-toolkit-v2/build/external//opt/minc
>>>>>> /1.9.13/share/cmake/hdf5
>>>>>> HDF5_LIBRARY=/home/minc/minc-toolkit-v2/build/external//opt/
>>>>>> minc/1.9.13/lib/libhdf5.so
>>>>>> HDF5_CPP_LIBRARY=/home/minc/minc-toolkit-v2/build/external//
>>>>>> opt/minc/1.9.13/lib/libhdf5_cpp.so
>>>>>> HDF5_HL_LIBRARY=/home/minc/minc-toolkit-v2/build/external//o
>>>>>> pt/minc/1.9.13/lib/libhdf5_hl.so
>>>>>> HDF5_HL_CPP_LIBRARY=/home/minc/minc-toolkit-v2/build/externa
>>>>>> l//opt/minc/1.9.13/lib/libhdf5_hl_cpp.so
>>>>>> CMake Error: The following variables are used in this project, but
>>>>>> they
>>>>>> are
>>>>>> set to NOTFOUND.
>>>>>> Please set them or make sure they are set and tested correctly in the
>>>>>> CMake
>>>>>> files:
>>>>>> JPEG_INCLUDE_DIR (ADVANCED)
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdi
>>>>>> sp
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdi
>>>>>> sp
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdi
>>>>>> sp
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdi
>>>>>> sp
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdi
>>>>>> sp
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdi
>>>>>> sp
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdi
>>>>>> sp
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdi
>>>>>> sp
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdi
>>>>>> sp
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdi
>>>>>> sp
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>>> used as include directory in directory
>>>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>>>
>>>>>> -- Configuring incomplete, errors occurred!
>>>>>> See also "/home/minc/minc-toolkit-v2/build/CMakeFiles/CMakeOutput.log
>>>>>> ".
>>>>>> See also "/home/minc/minc-toolkit-v2/build/CMakeFiles/CMakeError.log"
>>>>>> .
>>>>>>
>>>>>> What am I doing wrong here :?
>>>>>>
>>>>>> Thanks
>>>>>> Steffen
>>>>>> _______________________________________________
>>>>>> MINC-users at bic.mni.mcgill.ca
>>>>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>>>>>
>>>>>>
>>>>>> _______________________________________________
>>>>> MINC-users at bic.mni.mcgill.ca
>>>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>>>>
>>>>>
>>>>
>>>> _______________________________________________
>>> MINC-users at bic.mni.mcgill.ca
>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>>
>>>
>>
>> --
>> Best regards,
>>
>> Vladimir S. FONOV ~ vladimir.fonov <at> gmail.com
>> _______________________________________________
>> MINC-users at bic.mni.mcgill.ca
>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>
>
>
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