[MINC-users] Could NOT find JPEG (missing: JPEG_LIBRARY JPEG_INCLUDE_DIR)

Vladimir S. FONOV vladimir.fonov at gmail.com
Mon Feb 20 18:08:46 EST 2017 

Hello,

On 2017-02-20 12:18 AM, Steffen Bollmann wrote:
> I tried compiling the develop branch and for 'make test' I get one error:
>
> 99% tests passed, 1 tests failed out of 104
>
> Total Test time (real) =  44.28 sec
>
> The following tests FAILED:
>     104 - minctracc_bfgs_nonlinear (Failed)
> Errors while running CTest
> Makefile:72: recipe for target 'test' failed
> make: *** [test] Error 8

You can ignore this one.


>
>
>
> when I try to run 'make install', I get this error:
>
> Install the project...
> -- Install configuration: "Release"
> -- Installing: /opt/minc-itk4/./bin
> CMake Error at cmake_install.cmake:36 (file):
>   file INSTALL cannot make directory "/opt/minc-itk4/./bin": No such file or
>   directory

You don't have permission to create /opt/minc-itk4  (i.e run with sudo)



>
>
> Makefile:148: recipe for target 'install' failed
> make: *** [install] Error 1
>
>
> How can I solve this?
>
> Thank you and kind regards
> Steffen
>
> 2017-02-18 15:50 GMT+10:00 Steffen Bollmann <stebollmann at gmail.com>:
>
>> Dear Vladimir,
>>
>> Thankyou for your help. I installed these and it worked. The next error is
>> the missing zlib version, which was already discussed on the list:
>>
>>     src='http://zlib.net/zlib-1.2.8.tar.gz'
>>      dst='/home/minc/minc-toolkit-v2/build/ZLIB-prefix/src/zlib-
>> 1.2.8.tar.gz'
>>      timeout='none'
>> CMake Error at ZLIB-prefix/src/ZLIB-stamp/download-ZLIB.cmake:27
>> (message):
>>   error: downloading 'http://zlib.net/zlib-1.2.8.tar.gz' failed
>>
>>     status_code: 22
>>     status_string: "HTTP response code said error"
>>     log:   Trying 69.73.132.10...
>>
>>
>>
>> Is there a fix for this in the stable branch or should I try to compile
>> the develop branch where this has been fixed?
>>
>> Thank you
>> Seffen
>>
>> 2017-02-18 1:27 GMT+10:00 Vladimir S. Fonov <vladimir.fonov at gmail.com>:
>>
>>> Latest version of dcm2mnc needs libjpeg and libopenjpeg which need to be
>>> present.
>>>
>>>
>>> On 2017-02-17 04:05 AM, Steffen Bollmann wrote:
>>>
>>>> Hi All,
>>>>
>>>> I try to install https://github.com/BIC-MNI/minc-toolkit-v2 by following
>>>> the readme on an Ubuntu 16.04, but I get this error:
>>>>
>>>> cmake .. \
>>>>
>>>>> -DCMAKE_BUILD_TYPE:STRING=Release   \
>>>>> -DCMAKE_INSTALL_PREFIX:PATH=/opt/minc/1.9.13   \
>>>>> -DMT_BUILD_ABC:BOOL=ON   \
>>>>> -DMT_BUILD_ANTS:BOOL=ON   \
>>>>> -DMT_BUILD_C3D:BOOL=ON   \
>>>>> -DMT_BUILD_ELASTIX:BOOL=ON   \
>>>>> -DMT_BUILD_IM:BOOL=OFF   \
>>>>> -DMT_BUILD_ITK_TOOLS:BOOL=ON   \
>>>>> -DMT_BUILD_LITE:BOOL=OFF   \
>>>>> -DMT_BUILD_SHARED_LIBS:BOOL=ON   \
>>>>> -DMT_BUILD_VISUAL_TOOLS:BOOL=ON   \
>>>>> -DMT_USE_OPENMP:BOOL=ON   \
>>>>> -DUSE_SYSTEM_FFTW3D:BOOL=OFF   \
>>>>> -DUSE_SYSTEM_FFTW3F:BOOL=OFF   \
>>>>> -DUSE_SYSTEM_GLUT:BOOL=OFF   \
>>>>> -DUSE_SYSTEM_GSL:BOOL=OFF   \
>>>>> -DUSE_SYSTEM_HDF5:BOOL=OFF   \
>>>>> -DUSE_SYSTEM_ITK:BOOL=OFF   \
>>>>> -DUSE_SYSTEM_NETCDF:BOOL=OFF   \
>>>>> -DUSE_SYSTEM_NIFTI:BOOL=OFF   \
>>>>> -DUSE_SYSTEM_PCRE:BOOL=OFF   \
>>>>> -DUSE_SYSTEM_ZLIB:BOOL=OFF
>>>>>
>>>> -- Could NOT find JPEG (missing:  JPEG_LIBRARY JPEG_INCLUDE_DIR)
>>>> HDF5_DIR=/home/minc/minc-toolkit-v2/build/external//opt/minc
>>>> /1.9.13/share/cmake/hdf5
>>>> HDF5_LIBRARY=/home/minc/minc-toolkit-v2/build/external//opt/
>>>> minc/1.9.13/lib/libhdf5.so
>>>> HDF5_CPP_LIBRARY=/home/minc/minc-toolkit-v2/build/external//
>>>> opt/minc/1.9.13/lib/libhdf5_cpp.so
>>>> HDF5_HL_LIBRARY=/home/minc/minc-toolkit-v2/build/external//o
>>>> pt/minc/1.9.13/lib/libhdf5_hl.so
>>>> HDF5_HL_CPP_LIBRARY=/home/minc/minc-toolkit-v2/build/externa
>>>> l//opt/minc/1.9.13/lib/libhdf5_hl_cpp.so
>>>> CMake Error: The following variables are used in this project, but they
>>>> are
>>>> set to NOTFOUND.
>>>> Please set them or make sure they are set and tested correctly in the
>>>> CMake
>>>> files:
>>>> JPEG_INCLUDE_DIR (ADVANCED)
>>>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>>>> sp
>>>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>>>> sp
>>>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>>>> sp
>>>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>>>> sp
>>>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>>>> sp
>>>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>>>> sp
>>>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>>>> sp
>>>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>>>> sp
>>>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>>>> sp
>>>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>>>> sp
>>>>    used as include directory in directory
>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>    used as include directory in directory
>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>    used as include directory in directory
>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>    used as include directory in directory
>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>    used as include directory in directory
>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>    used as include directory in directory
>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>    used as include directory in directory
>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>    used as include directory in directory
>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>    used as include directory in directory
>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>    used as include directory in directory
>>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>>    used as include directory in directory
>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>    used as include directory in directory
>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>    used as include directory in directory
>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>    used as include directory in directory
>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>    used as include directory in directory
>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>    used as include directory in directory
>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>    used as include directory in directory
>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>    used as include directory in directory
>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>    used as include directory in directory
>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>    used as include directory in directory
>>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>>
>>>> -- Configuring incomplete, errors occurred!
>>>> See also "/home/minc/minc-toolkit-v2/build/CMakeFiles/CMakeOutput.log".
>>>> See also "/home/minc/minc-toolkit-v2/build/CMakeFiles/CMakeError.log".
>>>>
>>>> What am I doing wrong here :?
>>>>
>>>> Thanks
>>>> Steffen
>>>> _______________________________________________
>>>> MINC-users at bic.mni.mcgill.ca
>>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>>>
>>>>
>>> _______________________________________________
>>> MINC-users at bic.mni.mcgill.ca
>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>>
>>
>>
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>


-- 
Best regards,

  Vladimir S. FONOV ~ vladimir.fonov <at> gmail.com

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