[MINC-users] Could NOT find JPEG (missing: JPEG_LIBRARY JPEG_INCLUDE_DIR)

Steffen Bollmann stebollmann at gmail.com
Mon Feb 20 00:18:46 EST 2017 

I tried compiling the develop branch and for 'make test' I get one error:

99% tests passed, 1 tests failed out of 104

Total Test time (real) =  44.28 sec

The following tests FAILED:
    104 - minctracc_bfgs_nonlinear (Failed)
Errors while running CTest
Makefile:72: recipe for target 'test' failed
make: *** [test] Error 8



when I try to run 'make install', I get this error:

Install the project...
-- Install configuration: "Release"
-- Installing: /opt/minc-itk4/./bin
CMake Error at cmake_install.cmake:36 (file):
  file INSTALL cannot make directory "/opt/minc-itk4/./bin": No such file or
  directory


Makefile:148: recipe for target 'install' failed
make: *** [install] Error 1


How can I solve this?

Thank you and kind regards
Steffen

2017-02-18 15:50 GMT+10:00 Steffen Bollmann <stebollmann at gmail.com>:

> Dear Vladimir,
>
> Thankyou for your help. I installed these and it worked. The next error is
> the missing zlib version, which was already discussed on the list:
>
>     src='http://zlib.net/zlib-1.2.8.tar.gz'
>      dst='/home/minc/minc-toolkit-v2/build/ZLIB-prefix/src/zlib-
> 1.2.8.tar.gz'
>      timeout='none'
> CMake Error at ZLIB-prefix/src/ZLIB-stamp/download-ZLIB.cmake:27
> (message):
>   error: downloading 'http://zlib.net/zlib-1.2.8.tar.gz' failed
>
>     status_code: 22
>     status_string: "HTTP response code said error"
>     log:   Trying 69.73.132.10...
>
>
>
> Is there a fix for this in the stable branch or should I try to compile
> the develop branch where this has been fixed?
>
> Thank you
> Seffen
>
> 2017-02-18 1:27 GMT+10:00 Vladimir S. Fonov <vladimir.fonov at gmail.com>:
>
>> Latest version of dcm2mnc needs libjpeg and libopenjpeg which need to be
>> present.
>>
>>
>> On 2017-02-17 04:05 AM, Steffen Bollmann wrote:
>>
>>> Hi All,
>>>
>>> I try to install https://github.com/BIC-MNI/minc-toolkit-v2 by following
>>> the readme on an Ubuntu 16.04, but I get this error:
>>>
>>> cmake .. \
>>>
>>>> -DCMAKE_BUILD_TYPE:STRING=Release   \
>>>> -DCMAKE_INSTALL_PREFIX:PATH=/opt/minc/1.9.13   \
>>>> -DMT_BUILD_ABC:BOOL=ON   \
>>>> -DMT_BUILD_ANTS:BOOL=ON   \
>>>> -DMT_BUILD_C3D:BOOL=ON   \
>>>> -DMT_BUILD_ELASTIX:BOOL=ON   \
>>>> -DMT_BUILD_IM:BOOL=OFF   \
>>>> -DMT_BUILD_ITK_TOOLS:BOOL=ON   \
>>>> -DMT_BUILD_LITE:BOOL=OFF   \
>>>> -DMT_BUILD_SHARED_LIBS:BOOL=ON   \
>>>> -DMT_BUILD_VISUAL_TOOLS:BOOL=ON   \
>>>> -DMT_USE_OPENMP:BOOL=ON   \
>>>> -DUSE_SYSTEM_FFTW3D:BOOL=OFF   \
>>>> -DUSE_SYSTEM_FFTW3F:BOOL=OFF   \
>>>> -DUSE_SYSTEM_GLUT:BOOL=OFF   \
>>>> -DUSE_SYSTEM_GSL:BOOL=OFF   \
>>>> -DUSE_SYSTEM_HDF5:BOOL=OFF   \
>>>> -DUSE_SYSTEM_ITK:BOOL=OFF   \
>>>> -DUSE_SYSTEM_NETCDF:BOOL=OFF   \
>>>> -DUSE_SYSTEM_NIFTI:BOOL=OFF   \
>>>> -DUSE_SYSTEM_PCRE:BOOL=OFF   \
>>>> -DUSE_SYSTEM_ZLIB:BOOL=OFF
>>>>
>>> -- Could NOT find JPEG (missing:  JPEG_LIBRARY JPEG_INCLUDE_DIR)
>>> HDF5_DIR=/home/minc/minc-toolkit-v2/build/external//opt/minc
>>> /1.9.13/share/cmake/hdf5
>>> HDF5_LIBRARY=/home/minc/minc-toolkit-v2/build/external//opt/
>>> minc/1.9.13/lib/libhdf5.so
>>> HDF5_CPP_LIBRARY=/home/minc/minc-toolkit-v2/build/external//
>>> opt/minc/1.9.13/lib/libhdf5_cpp.so
>>> HDF5_HL_LIBRARY=/home/minc/minc-toolkit-v2/build/external//o
>>> pt/minc/1.9.13/lib/libhdf5_hl.so
>>> HDF5_HL_CPP_LIBRARY=/home/minc/minc-toolkit-v2/build/externa
>>> l//opt/minc/1.9.13/lib/libhdf5_hl_cpp.so
>>> CMake Error: The following variables are used in this project, but they
>>> are
>>> set to NOTFOUND.
>>> Please set them or make sure they are set and tested correctly in the
>>> CMake
>>> files:
>>> JPEG_INCLUDE_DIR (ADVANCED)
>>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>>> sp
>>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>>> sp
>>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>>> sp
>>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>>> sp
>>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>>> sp
>>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>>> sp
>>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>>> sp
>>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>>> sp
>>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>>> sp
>>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>>> sp
>>>    used as include directory in directory
>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>    used as include directory in directory
>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>    used as include directory in directory
>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>    used as include directory in directory
>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>    used as include directory in directory
>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>    used as include directory in directory
>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>    used as include directory in directory
>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>    used as include directory in directory
>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>    used as include directory in directory
>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>    used as include directory in directory
>>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>>    used as include directory in directory
>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>    used as include directory in directory
>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>    used as include directory in directory
>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>    used as include directory in directory
>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>    used as include directory in directory
>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>    used as include directory in directory
>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>    used as include directory in directory
>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>    used as include directory in directory
>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>    used as include directory in directory
>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>    used as include directory in directory
>>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>>
>>> -- Configuring incomplete, errors occurred!
>>> See also "/home/minc/minc-toolkit-v2/build/CMakeFiles/CMakeOutput.log".
>>> See also "/home/minc/minc-toolkit-v2/build/CMakeFiles/CMakeError.log".
>>>
>>> What am I doing wrong here :?
>>>
>>> Thanks
>>> Steffen
>>> _______________________________________________
>>> MINC-users at bic.mni.mcgill.ca
>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>>
>>>
>> _______________________________________________
>> MINC-users at bic.mni.mcgill.ca
>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>
>
>

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