[MINC-users] Could NOT find JPEG (missing: JPEG_LIBRARY JPEG_INCLUDE_DIR)

[Steffen Bollmann]

Dear Vladimir,

Thankyou for your help. I installed these and it worked. The next error is
the missing zlib version, which was already discussed on the list:

    src='http://zlib.net/zlib-1.2.8.tar.gz'

dst='/home/minc/minc-toolkit-v2/build/ZLIB-prefix/src/zlib-1.2.8.tar.gz'
     timeout='none'
CMake Error at ZLIB-prefix/src/ZLIB-stamp/download-ZLIB.cmake:27 (message):
  error: downloading 'http://zlib.net/zlib-1.2.8.tar.gz' failed

    status_code: 22
    status_string: "HTTP response code said error"
    log:   Trying 69.73.132.10...



Is there a fix for this in the stable branch or should I try to compile the
develop branch where this has been fixed?

Thank you
Seffen

2017-02-18 1:27 GMT+10:00 Vladimir S. Fonov <vladimir.fonov at gmail.com>:

> Latest version of dcm2mnc needs libjpeg and libopenjpeg which need to be
> present.
>
>
> On 2017-02-17 04:05 AM, Steffen Bollmann wrote:
>
>> Hi All,
>>
>> I try to install https://github.com/BIC-MNI/minc-toolkit-v2 by following
>> the readme on an Ubuntu 16.04, but I get this error:
>>
>> cmake .. \
>>
>>> -DCMAKE_BUILD_TYPE:STRING=Release   \
>>> -DCMAKE_INSTALL_PREFIX:PATH=/opt/minc/1.9.13   \
>>> -DMT_BUILD_ABC:BOOL=ON   \
>>> -DMT_BUILD_ANTS:BOOL=ON   \
>>> -DMT_BUILD_C3D:BOOL=ON   \
>>> -DMT_BUILD_ELASTIX:BOOL=ON   \
>>> -DMT_BUILD_IM:BOOL=OFF   \
>>> -DMT_BUILD_ITK_TOOLS:BOOL=ON   \
>>> -DMT_BUILD_LITE:BOOL=OFF   \
>>> -DMT_BUILD_SHARED_LIBS:BOOL=ON   \
>>> -DMT_BUILD_VISUAL_TOOLS:BOOL=ON   \
>>> -DMT_USE_OPENMP:BOOL=ON   \
>>> -DUSE_SYSTEM_FFTW3D:BOOL=OFF   \
>>> -DUSE_SYSTEM_FFTW3F:BOOL=OFF   \
>>> -DUSE_SYSTEM_GLUT:BOOL=OFF   \
>>> -DUSE_SYSTEM_GSL:BOOL=OFF   \
>>> -DUSE_SYSTEM_HDF5:BOOL=OFF   \
>>> -DUSE_SYSTEM_ITK:BOOL=OFF   \
>>> -DUSE_SYSTEM_NETCDF:BOOL=OFF   \
>>> -DUSE_SYSTEM_NIFTI:BOOL=OFF   \
>>> -DUSE_SYSTEM_PCRE:BOOL=OFF   \
>>> -DUSE_SYSTEM_ZLIB:BOOL=OFF
>>>
>> -- Could NOT find JPEG (missing:  JPEG_LIBRARY JPEG_INCLUDE_DIR)
>> HDF5_DIR=/home/minc/minc-toolkit-v2/build/external//opt/
>> minc/1.9.13/share/cmake/hdf5
>> HDF5_LIBRARY=/home/minc/minc-toolkit-v2/build/external//opt/
>> minc/1.9.13/lib/libhdf5.so
>> HDF5_CPP_LIBRARY=/home/minc/minc-toolkit-v2/build/external//
>> opt/minc/1.9.13/lib/libhdf5_cpp.so
>> HDF5_HL_LIBRARY=/home/minc/minc-toolkit-v2/build/external//
>> opt/minc/1.9.13/lib/libhdf5_hl.so
>> HDF5_HL_CPP_LIBRARY=/home/minc/minc-toolkit-v2/build/externa
>> l//opt/minc/1.9.13/lib/libhdf5_hl_cpp.so
>> CMake Error: The following variables are used in this project, but they
>> are
>> set to NOTFOUND.
>> Please set them or make sure they are set and tested correctly in the
>> CMake
>> files:
>> JPEG_INCLUDE_DIR (ADVANCED)
>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>> sp
>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>> sp
>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>> sp
>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>> sp
>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>> sp
>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>> sp
>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>> sp
>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>> sp
>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>> sp
>>    used as include directory in directory /home/minc/minc-toolkit-v2/xdi
>> sp
>>    used as include directory in directory
>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>    used as include directory in directory
>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>    used as include directory in directory
>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>    used as include directory in directory
>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>    used as include directory in directory
>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>    used as include directory in directory
>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>    used as include directory in directory
>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>    used as include directory in directory
>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>    used as include directory in directory
>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>    used as include directory in directory
>> /home/minc/minc-toolkit-v2/xdisp/olgx
>>    used as include directory in directory
>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>    used as include directory in directory
>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>    used as include directory in directory
>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>    used as include directory in directory
>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>    used as include directory in directory
>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>    used as include directory in directory
>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>    used as include directory in directory
>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>    used as include directory in directory
>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>    used as include directory in directory
>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>    used as include directory in directory
>> /home/minc/minc-toolkit-v2/xdisp/EZWGL-1.50
>>
>> -- Configuring incomplete, errors occurred!
>> See also "/home/minc/minc-toolkit-v2/build/CMakeFiles/CMakeOutput.log".
>> See also "/home/minc/minc-toolkit-v2/build/CMakeFiles/CMakeError.log".
>>
>> What am I doing wrong here :?
>>
>> Thanks
>> Steffen
>> _______________________________________________
>> MINC-users at bic.mni.mcgill.ca
>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>
>>
> _______________________________________________
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> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>