[MINC-users] minc tool to extract voxel values within a mask?

[Andrew Janke]

Hi Gabriel,

Take a look at mincsample. I wrote it around this purpose.

It also does random sampling of the area via the Mersene Twister algorithm.


a


On 2 February 2017 at 10:10, Gabriel A. Devenyi
<gabriel.devenyi at mcgill.ca> wrote:
> Hi all,
>
> I have a user asking about extracting raw intensity values from a MINC
> image, from a region defined by a mask (label file, specific bin value).
>
> The closest thing I can find is mincextract but it doesn't have mask
> support.
>
> Does anyone know of a script/hack to extract values like this?
>
> Thanks!
>
> --
> Gabriel A. Devenyi B.Eng. Ph.D.
> Research Computing Associate
> Computational Brain Anatomy Laboratory
> Cerebral Imaging Center
> Douglas Mental Health University Institute
> McGill University
> t: 514.761.6131x4781
> e: gabriel.devenyi at mcgill.ca
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
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