[MINC-users] nii2mnc conversion offset

[Robert D. Vincent]

Hi,

There are some known problems with the nii2mnc transform conversion, there
is a new version that should address it.

Contact me directly if you'd like to get a binary copy.

    -bert

On Wed, Oct 12, 2016 at 10:23 PM, Caroline Paquette <
caroline.paquette at mcgill.ca> wrote:

> Hi,
>
> We're having trouble converting images from nifti to minc (drawn roi with
> t1). As seen in these images, when images are in nii, alignment is fine but
> when converting to mnc (using nii2mnc), there is a large offset.
>
> Any idea on what we're doing wrong? I had tried deleting the orientation
> in nii with success in the past but it does not solve the problem here.
>
> Thanks!
>
> Caroline
>
>
>
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