[MINC-users] nii2mnc conversion offset

[Simon Eskildsen]

Hi Bert,
Does this resolve the issue we have been discussing on github?
https://github.com/BIC-MNI/minc-tools/issues/32

If so, did you commit the code?

Thanks,
Simon

On Thu, Oct 13, 2016 at 5:12 AM, Robert D. Vincent <
robert.d.vincent at mcgill.ca> wrote:

> Hi,
>
> There are some known problems with the nii2mnc transform conversion, there
> is a new version that should address it.
>
> Contact me directly if you'd like to get a binary copy.
>
>     -bert
>
> On Wed, Oct 12, 2016 at 10:23 PM, Caroline Paquette <
> caroline.paquette at mcgill.ca> wrote:
>
> > Hi,
> >
> > We're having trouble converting images from nifti to minc (drawn roi with
> > t1). As seen in these images, when images are in nii, alignment is fine
> but
> > when converting to mnc (using nii2mnc), there is a large offset.
> >
> > Any idea on what we're doing wrong? I had tried deleting the orientation
> > in nii with success in the past but it does not solve the problem here.
> >
> > Thanks!
> >
> > Caroline
> >
> >
> >
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>