[MINC-users] Virtual machine that includes minc tools

[Alex Zijdenbos]

Hi Paul - user/pass are in the instructions on that page I sent:

User: minc pass: minc

that user has full sudo privileges iirc.

On Wed, May 18, 2016 at 11:24 AM, Paul GRAVEL <pgravel at bic.mni.mcgill.ca>
wrote:

> Dear All,
>
> So I am now trying Alex's method, which is working so far, but I would
> need a username and a password, Alex?
>
> The reason for these questions is that I am preparing a hands-on training
> session as part of the PET Workshop happening in a couple of weeks, and I
> would have liked to have a virtual machine file with all the necessary
> tools, in order to make it easier for the participants to install the
> package.
>
> Best,
>
> Paul
>
>
>
> On Wed, 18 May 2016, Vladimir S. FONOV wrote:
>
> Hello,
>>
>> On 16-05-18 10:42 AM, Dante De Nigris wrote:
>>
>>> Similar to Pierre's previous proposal, I recently built a docker image
>>> with
>>> the minc-toolkit.  I was personally interested in building a very small
>>> image so I use the Alpine Linux Base image and build everything from
>>> scratch.
>>>
>> So, you want to run minc-toolkit on your embedded device?
>>
>>
>>
>>
>>> Thiis might not correspond directly to your current needs, but it was
>>> pretty reasonable for me.
>>>
>>> https://hub.docker.com/r/dantino19/minc-toolkit/
>>>
>>>
>>>
>>> On Tue, May 17, 2016 at 11:39 PM Paul GRAVEL <pgravel at bic.mni.mcgill.ca>
>>> wrote:
>>>
>>> Once again many thanks Andrew and Pierre!
>>>>
>>>> It seems to have worked after sourcing /opt/minc/minc-toolkit-config.sh
>>>> .
>>>>
>>>> I will give it a try (using MINC files) tomorrow.
>>>>
>>>> @Andrew: have a good day!
>>>>
>>>> @Pierre: Have a good night!
>>>>
>>>> Best,
>>>>
>>>> Paul
>>>>
>>>> On Tue, 17 May 2016, Pierre Bellec wrote:
>>>>
>>>> Paul, you may also want to look at dependencies and sourcing
>>>>> environment variables (paragraph "using") in the documentation:
>>>>> http://bic-mni.github.io/#installing
>>>>>
>>>>> Pierre Bellec
>>>>> Assistant professor ("adjoint sous octroi"), Department of computer
>>>>>
>>>> science
>>>>
>>>>> and operational research (DIRO <http://diro.umontreal.ca/>)
>>>>> Member, Centre de recherche de l'institut Universitaire de gériatrie de
>>>>> Montréal (CRIUGM <http://www.criugm.qc.ca/>)
>>>>> Member, Institute of Biomedical Engineering <
>>>>>
>>>> http://www.igb.umontreal.ca/>
>>>>
>>>>> Université de Montréal, Montréal, Canada
>>>>> Phone +1 514 713 5596
>>>>> Full coordinates on my home page
>>>>> <http://simexp-lab.org/brainwiki/doku.php?id=pierrebellec>
>>>>> Laboratory website <http://simexp-lab.org>.
>>>>>
>>>>> On Tue, May 17, 2016 at 11:01 PM, Andrew Janke <a.janke at gmail.com>
>>>>>
>>>> wrote:
>>>>
>>>>>
>>>>> In my case I add my own private apt repository that mirrors things
>>>>>> from the new a shiny source here:
>>>>>>
>>>>>>     http://bic-mni.github.io/
>>>>>>
>>>>>> In your case, just download the appropriate .deb file and then install
>>>>>> using dpkg.
>>>>>>
>>>>>> This should do it:
>>>>>>
>>>>>>     $ wget
>>>>>>
>>>>>>
>>>>
>> http://packages.bic.mni.mcgill.ca/minc-toolkit/Debian/minc-toolkit-1.9.11-20160202-Debian_7.3-x86_64.deb
>>
>>>
>>>>>>     $ sudo dpkg -i minc-toolkit-1.9.11-20160202-Debian_7.3-x86_64.deb
>>>>>>
>>>>>>
>>>>>> a
>>>>>>
>>>>>> On 18 May 2016 at 12:56, Paul GRAVEL <pgravel at bic.mni.mcgill.ca>
>>>>>> wrote:
>>>>>>
>>>>>>> So I installed:
>>>>>>> NeuroDebian 7.8.0 image (64bit) for Windows 7 64 bit.
>>>>>>>
>>>>>>> After importing the "Applicance" in VirtualBox and configuring, I can
>>>>>>>
>>>>>> start
>>>>>>
>>>>>>> the virtual machine, so far so good, but when I come to install the
>>>>>>> minctools; I had to use:
>>>>>>> sudo apt-get install minc-toolkit
>>>>>>>
>>>>>>> I get the following:
>>>>>>> Reading package lists... Done
>>>>>>> Building dependency tree
>>>>>>> Reading state information... Done
>>>>>>> E: Unable to locate package minc-toolkit
>>>>>>>
>>>>>>> any ideas?
>>>>>>>
>>>>>>> Thanks again!
>>>>>>>
>>>>>>> Paul
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> On Wed, 18 May 2016, Andrew Janke wrote:
>>>>>>>
>>>>>>> I'm sure I saw one pass through the minc-users mailing list a while
>>>>>>>>
>>>>>>> back?
>>>>>>
>>>>>>>
>>>>>>>> I use the neurodebian VM and then
>>>>>>>>
>>>>>>>>    apt-get install minc-toolkit     (thanks Vlad!)
>>>>>>>>
>>>>>>>> a
>>>>>>>>
>>>>>>>>
>>>>>>>> On 18 May 2016 at 11:58, Paul GRAVEL <pgravel at bic.mni.mcgill.ca>
>>>>>>>>
>>>>>>> wrote:
>>>>
>>>>>
>>>>>>>>> Dear All,
>>>>>>>>>
>>>>>>>>> I want to prepare a virtual machine for VirtualBox that includes a
>>>>>>>>>
>>>>>>>> linux
>>>>>>
>>>>>>> version with the minc tools. But being lazy (;-)!), I was wondering
>>>>>>>>>
>>>>>>>> if
>>>>
>>>>> anyone already had that and be willing to share.
>>>>>>>>> Otherwise, any pointers on how to go about it (of course I would be
>>>>>>>>> willing
>>>>>>>>> to share the finished product!)?
>>>>>>>>>
>>>>>>>>
>>
>> --
>> Best regards,
>>
>>  Vladimir S. FONOV ~ vladimir.fonov <at> gmail.com
>> _______________________________________________
>> MINC-users at bic.mni.mcgill.ca
>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>
>
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> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>
>