[MINC-users] Virtual machine that includes minc tools

[Paul GRAVEL]

Dear All,

So I am now trying Alex's method, which is working so far, but I would 
need a username and a password, Alex?

The reason for these questions is that I am preparing a hands-on training 
session as part of the PET Workshop happening in a couple of weeks, and I 
would have liked to have a virtual machine file with all the necessary 
tools, in order to make it easier for the participants to install the 
package.

Best,

Paul


On Wed, 18 May 2016, Vladimir S. FONOV wrote:

> Hello,
>
> On 16-05-18 10:42 AM, Dante De Nigris wrote:
>> Similar to Pierre's previous proposal, I recently built a docker image with
>> the minc-toolkit.  I was personally interested in building a very small
>> image so I use the Alpine Linux Base image and build everything from
>> scratch.
> So, you want to run minc-toolkit on your embedded device?
>
>
>
>>
>> Thiis might not correspond directly to your current needs, but it was
>> pretty reasonable for me.
>>
>> https://hub.docker.com/r/dantino19/minc-toolkit/
>>
>>
>>
>> On Tue, May 17, 2016 at 11:39 PM Paul GRAVEL <pgravel at bic.mni.mcgill.ca>
>> wrote:
>>
>>> Once again many thanks Andrew and Pierre!
>>>
>>> It seems to have worked after sourcing /opt/minc/minc-toolkit-config.sh .
>>>
>>> I will give it a try (using MINC files) tomorrow.
>>>
>>> @Andrew: have a good day!
>>>
>>> @Pierre: Have a good night!
>>>
>>> Best,
>>>
>>> Paul
>>>
>>> On Tue, 17 May 2016, Pierre Bellec wrote:
>>>
>>>> Paul, you may also want to look at dependencies and sourcing
>>>> environment variables (paragraph "using") in the documentation:
>>>> http://bic-mni.github.io/#installing
>>>>
>>>> Pierre Bellec
>>>> Assistant professor ("adjoint sous octroi"), Department of computer
>>> science
>>>> and operational research (DIRO <http://diro.umontreal.ca/>)
>>>> Member, Centre de recherche de l'institut Universitaire de gériatrie de
>>>> Montréal (CRIUGM <http://www.criugm.qc.ca/>)
>>>> Member, Institute of Biomedical Engineering <
>>> http://www.igb.umontreal.ca/>
>>>> Université de Montréal, Montréal, Canada
>>>> Phone +1 514 713 5596
>>>> Full coordinates on my home page
>>>> <http://simexp-lab.org/brainwiki/doku.php?id=pierrebellec>
>>>> Laboratory website <http://simexp-lab.org>.
>>>>
>>>> On Tue, May 17, 2016 at 11:01 PM, Andrew Janke <a.janke at gmail.com>
>>> wrote:
>>>>
>>>>> In my case I add my own private apt repository that mirrors things
>>>>> from the new a shiny source here:
>>>>>
>>>>>     http://bic-mni.github.io/
>>>>>
>>>>> In your case, just download the appropriate .deb file and then install
>>>>> using dpkg.
>>>>>
>>>>> This should do it:
>>>>>
>>>>>     $ wget
>>>>>
>>> 
> http://packages.bic.mni.mcgill.ca/minc-toolkit/Debian/minc-toolkit-1.9.11-20160202-Debian_7.3-x86_64.deb
>>>>>
>>>>>     $ sudo dpkg -i minc-toolkit-1.9.11-20160202-Debian_7.3-x86_64.deb
>>>>>
>>>>>
>>>>> a
>>>>>
>>>>> On 18 May 2016 at 12:56, Paul GRAVEL <pgravel at bic.mni.mcgill.ca> wrote:
>>>>>> So I installed:
>>>>>> NeuroDebian 7.8.0 image (64bit) for Windows 7 64 bit.
>>>>>>
>>>>>> After importing the "Applicance" in VirtualBox and configuring, I can
>>>>> start
>>>>>> the virtual machine, so far so good, but when I come to install the
>>>>>> minctools; I had to use:
>>>>>> sudo apt-get install minc-toolkit
>>>>>>
>>>>>> I get the following:
>>>>>> Reading package lists... Done
>>>>>> Building dependency tree
>>>>>> Reading state information... Done
>>>>>> E: Unable to locate package minc-toolkit
>>>>>>
>>>>>> any ideas?
>>>>>>
>>>>>> Thanks again!
>>>>>>
>>>>>> Paul
>>>>>>
>>>>>>
>>>>>>
>>>>>> On Wed, 18 May 2016, Andrew Janke wrote:
>>>>>>
>>>>>>> I'm sure I saw one pass through the minc-users mailing list a while
>>>>> back?
>>>>>>>
>>>>>>> I use the neurodebian VM and then
>>>>>>>
>>>>>>>    apt-get install minc-toolkit     (thanks Vlad!)
>>>>>>>
>>>>>>> a
>>>>>>>
>>>>>>>
>>>>>>> On 18 May 2016 at 11:58, Paul GRAVEL <pgravel at bic.mni.mcgill.ca>
>>> wrote:
>>>>>>>>
>>>>>>>> Dear All,
>>>>>>>>
>>>>>>>> I want to prepare a virtual machine for VirtualBox that includes a
>>>>> linux
>>>>>>>> version with the minc tools. But being lazy (;-)!), I was wondering
>>> if
>>>>>>>> anyone already had that and be willing to share.
>>>>>>>> Otherwise, any pointers on how to go about it (of course I would be
>>>>>>>> willing
>>>>>>>> to share the finished product!)?
>
>
> -- 
> Best regards,
>
>  Vladimir S. FONOV ~ vladimir.fonov <at> gmail.com
> _______________________________________________
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>