[MINC-users] Virtual machine that includes minc tools

[Paul GRAVEL]

Thanks Alex!

I should have read the instructions more carefully!

Actually, this package would be in essence what I was looking for.
Unfortunately, I had different outcomes with NeuroDebian installation on a 
laptop and on my desktop at work (I of course acknowledge that this is 
most lokely due to my limitations in such matters ;-)!)

That being said, if need be, would it be ok Alex if I distribute your 
virtual machine for a workshop?
I would of course acknowledge you!

Many thanks to All who replied!

Best Regards,

Paul


On Wed, 18 May 2016, Alex Zijdenbos wrote:

> Hi Paul - user/pass are in the instructions on that page I sent:
>
> User: minc pass: minc
>
> that user has full sudo privileges iirc.
>
> On Wed, May 18, 2016 at 11:24 AM, Paul GRAVEL <pgravel at bic.mni.mcgill.ca>
> wrote:
>
>> Dear All,
>>
>> So I am now trying Alex's method, which is working so far, but I would
>> need a username and a password, Alex?
>>
>> The reason for these questions is that I am preparing a hands-on training
>> session as part of the PET Workshop happening in a couple of weeks, and I
>> would have liked to have a virtual machine file with all the necessary
>> tools, in order to make it easier for the participants to install the
>> package.
>>
>> Best,
>>
>> Paul
>>
>>
>>
>> On Wed, 18 May 2016, Vladimir S. FONOV wrote:
>>
>> Hello,
>>>
>>> On 16-05-18 10:42 AM, Dante De Nigris wrote:
>>>
>>>> Similar to Pierre's previous proposal, I recently built a docker image
>>>> with
>>>> the minc-toolkit.  I was personally interested in building a very small
>>>> image so I use the Alpine Linux Base image and build everything from
>>>> scratch.
>>>>
>>> So, you want to run minc-toolkit on your embedded device?
>>>
>>>
>>>
>>>
>>>> Thiis might not correspond directly to your current needs, but it was
>>>> pretty reasonable for me.
>>>>
>>>> https://hub.docker.com/r/dantino19/minc-toolkit/
>>>>
>>>>
>>>>
>>>> On Tue, May 17, 2016 at 11:39 PM Paul GRAVEL <pgravel at bic.mni.mcgill.ca>
>>>> wrote:
>>>>
>>>> Once again many thanks Andrew and Pierre!
>>>>>
>>>>> It seems to have worked after sourcing /opt/minc/minc-toolkit-config.sh
>>>>> .
>>>>>
>>>>> I will give it a try (using MINC files) tomorrow.
>>>>>
>>>>> @Andrew: have a good day!
>>>>>
>>>>> @Pierre: Have a good night!
>>>>>
>>>>> Best,
>>>>>
>>>>> Paul
>>>>>
>>>>> On Tue, 17 May 2016, Pierre Bellec wrote:
>>>>>
>>>>> Paul, you may also want to look at dependencies and sourcing
>>>>>> environment variables (paragraph "using") in the documentation:
>>>>>> http://bic-mni.github.io/#installing
>>>>>>
>>>>>> Pierre Bellec
>>>>>> Assistant professor ("adjoint sous octroi"), Department of computer
>>>>>>
>>>>> science
>>>>>
>>>>>> and operational research (DIRO <http://diro.umontreal.ca/>)
>>>>>> Member, Centre de recherche de l'institut Universitaire de gériatrie de
>>>>>> Montréal (CRIUGM <http://www.criugm.qc.ca/>)
>>>>>> Member, Institute of Biomedical Engineering <
>>>>>>
>>>>> http://www.igb.umontreal.ca/>
>>>>>
>>>>>> Université de Montréal, Montréal, Canada
>>>>>> Phone +1 514 713 5596
>>>>>> Full coordinates on my home page
>>>>>> <http://simexp-lab.org/brainwiki/doku.php?id=pierrebellec>
>>>>>> Laboratory website <http://simexp-lab.org>.
>>>>>>
>>>>>> On Tue, May 17, 2016 at 11:01 PM, Andrew Janke <a.janke at gmail.com>
>>>>>>
>>>>> wrote:
>>>>>
>>>>>>
>>>>>> In my case I add my own private apt repository that mirrors things
>>>>>>> from the new a shiny source here:
>>>>>>>
>>>>>>>     http://bic-mni.github.io/
>>>>>>>
>>>>>>> In your case, just download the appropriate .deb file and then install
>>>>>>> using dpkg.
>>>>>>>
>>>>>>> This should do it:
>>>>>>>
>>>>>>>     $ wget
>>>>>>>
>>>>>>>
>>>>>
>>> http://packages.bic.mni.mcgill.ca/minc-toolkit/Debian/minc-toolkit-1.9.11-20160202-Debian_7.3-x86_64.deb
>>>
>>>>
>>>>>>>     $ sudo dpkg -i minc-toolkit-1.9.11-20160202-Debian_7.3-x86_64.deb
>>>>>>>
>>>>>>>
>>>>>>> a
>>>>>>>
>>>>>>> On 18 May 2016 at 12:56, Paul GRAVEL <pgravel at bic.mni.mcgill.ca>
>>>>>>> wrote:
>>>>>>>
>>>>>>>> So I installed:
>>>>>>>> NeuroDebian 7.8.0 image (64bit) for Windows 7 64 bit.
>>>>>>>>
>>>>>>>> After importing the "Applicance" in VirtualBox and configuring, I can
>>>>>>>>
>>>>>>> start
>>>>>>>
>>>>>>>> the virtual machine, so far so good, but when I come to install the
>>>>>>>> minctools; I had to use:
>>>>>>>> sudo apt-get install minc-toolkit
>>>>>>>>
>>>>>>>> I get the following:
>>>>>>>> Reading package lists... Done
>>>>>>>> Building dependency tree
>>>>>>>> Reading state information... Done
>>>>>>>> E: Unable to locate package minc-toolkit
>>>>>>>>
>>>>>>>> any ideas?
>>>>>>>>
>>>>>>>> Thanks again!
>>>>>>>>
>>>>>>>> Paul
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> On Wed, 18 May 2016, Andrew Janke wrote:
>>>>>>>>
>>>>>>>> I'm sure I saw one pass through the minc-users mailing list a while
>>>>>>>>>
>>>>>>>> back?
>>>>>>>
>>>>>>>>
>>>>>>>>> I use the neurodebian VM and then
>>>>>>>>>
>>>>>>>>>    apt-get install minc-toolkit     (thanks Vlad!)
>>>>>>>>>
>>>>>>>>> a
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On 18 May 2016 at 11:58, Paul GRAVEL <pgravel at bic.mni.mcgill.ca>
>>>>>>>>>
>>>>>>>> wrote:
>>>>>
>>>>>>
>>>>>>>>>> Dear All,
>>>>>>>>>>
>>>>>>>>>> I want to prepare a virtual machine for VirtualBox that includes a
>>>>>>>>>>
>>>>>>>>> linux
>>>>>>>
>>>>>>>> version with the minc tools. But being lazy (;-)!), I was wondering
>>>>>>>>>>
>>>>>>>>> if
>>>>>
>>>>>> anyone already had that and be willing to share.
>>>>>>>>>> Otherwise, any pointers on how to go about it (of course I would be
>>>>>>>>>> willing
>>>>>>>>>> to share the finished product!)?
>>>>>>>>>>
>>>>>>>>>
>>>
>>> --
>>> Best regards,
>>>
>>>  Vladimir S. FONOV ~ vladimir.fonov <at> gmail.com
>>> _______________________________________________
>>> MINC-users at bic.mni.mcgill.ca
>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>>
>>
>> _______________________________________________
>> MINC-users at bic.mni.mcgill.ca
>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>
>>
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