[MINC-users] nii2mnc

[Vladimir S. FONOV]

Hello,

it could fail for many reasons....
You can try itk_convert - see if it helps.

On 2016-07-21 03:06 PM, Trisanna Sprung-Much wrote:
> Hello
>
> I recently tried to use nii2mnc on some ex-vivo scans and the command seems
> to fail. Any ideas as to why? I think it has to do with the format of my
> nifti file?
>
> many thanks
>
> Trisanna
>
> nii2mnc: Convert NIfTI-1 files to MINC format
> usage: nii2mnc [options] filename.nii [filename.mnc]
>  nii2mnc Merv_7T.nii Merv_7T.mnc
> <nifti_image
>   nifti_type = 'NIFTI-1+'
>   header_filename = 'Merv_7T.nii'
>   image_filename = 'Merv_7T.nii'
>   image_offset = '352'
>   ndim = '3'
>   nx = '280'
>   ny = '280'
>   nz = '80'
>   dx = '0.428571'
>   dy = '0.428571'
>   dz = '1.5'
>   datatype = '4'
>   datatype_name = 'INT16'
>   nvox = '6272000'
>   nbyper = '2'
>   byteorder = 'LSB_FIRST'
>   scl_slope = '1'
>   scl_inter = '0'
>   xyz_units = '2'
>   xyz_units_name = 'mm'
>   time_units = '8'
>   time_units_name = 's'
>   descrip = 'FSL5.0'
>   num_ext = '0'
> />
> Segmentation fault (core dumped)
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>


-- 
Best regards,

  Vladimir S. FONOV ~ vladimir.fonov <at> gmail.com