[MINC-users] nii2mnc

[Robert D. Vincent]

Hi Trisanna,

It looks like your file does not contain a specification of a spatial
transform from voxel to world space - the code to handle this in nii2mnc
was broken a while back. It's fixed now, but I don't think that version has
been officially released yet.

    -bert

On Thu, Jul 21, 2016 at 5:03 PM, Vladimir S. FONOV <vladimir.fonov at gmail.com
> wrote:

> Hello,
>
> it could fail for many reasons....
> You can try itk_convert - see if it helps.
>
>
> On 2016-07-21 03:06 PM, Trisanna Sprung-Much wrote:
>
>> Hello
>>
>> I recently tried to use nii2mnc on some ex-vivo scans and the command
>> seems
>> to fail. Any ideas as to why? I think it has to do with the format of my
>> nifti file?
>>
>> many thanks
>>
>> Trisanna
>>
>> nii2mnc: Convert NIfTI-1 files to MINC format
>> usage: nii2mnc [options] filename.nii [filename.mnc]
>>  nii2mnc Merv_7T.nii Merv_7T.mnc
>> <nifti_image
>>   nifti_type = 'NIFTI-1+'
>>   header_filename = 'Merv_7T.nii'
>>   image_filename = 'Merv_7T.nii'
>>   image_offset = '352'
>>   ndim = '3'
>>   nx = '280'
>>   ny = '280'
>>   nz = '80'
>>   dx = '0.428571'
>>   dy = '0.428571'
>>   dz = '1.5'
>>   datatype = '4'
>>   datatype_name = 'INT16'
>>   nvox = '6272000'
>>   nbyper = '2'
>>   byteorder = 'LSB_FIRST'
>>   scl_slope = '1'
>>   scl_inter = '0'
>>   xyz_units = '2'
>>   xyz_units_name = 'mm'
>>   time_units = '8'
>>   time_units_name = 's'
>>   descrip = 'FSL5.0'
>>   num_ext = '0'
>> />
>> Segmentation fault (core dumped)
>> _______________________________________________
>> MINC-users at bic.mni.mcgill.ca
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>>
>>
>
> --
> Best regards,
>
>  Vladimir S. FONOV ~ vladimir.fonov <at> gmail.com
> _______________________________________________
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>