[MINC-users] build almost everything minc Makefile and git repository for EZminc

[Mishkin Derakhshan]

Hi,
I've had the same problem with Display/register on my ubuntu 10.10 32-blt build.

The first time around I tried this, but did not get register or Display:
make all PREFIX=/usr/local/bic TEMP=$HOME/temp

So I tried this and got register:
make register PREFIX=/usr/local/bic TEMP=$HOME/temp

But this didn't work for Display (ie. no executable).
make Display PREFIX=/usr/local/bic TEMP=$HOME/temp

Then I tried debugging:
Inside the source dir of Display-1.5.0
./configure --prefix=/usr/local/bic --with-build-path=/usr/local/bic
--with-minc2 --with-x
make

Which runs to completion but does not produce an executable. Attached
is my config.log.

Micheal: I don't get that error with register. must be video card
specific or else fixed in 10.10.

mishkin




On Mon, Mar 28, 2011 at 2:54 PM, Keaser, Michael L
<MKeaser at umaryland.edu> wrote:
>
> Luis,
>
> I tried your suggestions, and that seemed to work for register, but not Display. I tried configuring Display separately and it is still an issue. I don't see it in the bin directory with the other commands  like register, mincblob, etc.
>
> Also, with register, I get this error message every time i try to use it:
>
> Xlib:  extension "GLX" missing on display ":0.0".
> freeglut (no_program_name): OpenGL GLX extension not supported by display ':0.0'
>
> Have you seen an error like  this before?
>
> Thanks,
>
> Michael
> ________________________________________
> From: minc-users-bounces at bic.mni.mcgill.ca [minc-users-bounces at bic.mni.mcgill.ca] On Behalf Of Luis Concha [lconcha at gmail.com]
> Sent: Monday, March 28, 2011 2:18 PM
> To: MINC users mailing list
> Subject: Re: [MINC-users] build almost everything minc Makefile and git repository for EZminc
>
> Hi Michael.
>
> I noticed that, too. I saw that the option make visual is not included
> in the makefile, although it is on the help for it. All I did was add
> a line:
> visual : $(register) $(Display).
>
> Regarding bicp, use make bicpl first, then make visual.
>
> I hope this helps.
>
> Luis
>
>
>
> On Mon, Mar 28, 2011 at 11:48 AM, Keaser, Michael L
> <MKeaser at umaryland.edu> wrote:
> > Vladmir,
> >
> > I installed most of the minc packages with the makefile you provided. However, I am having trouble installing Register and Display. I am using Ubuntu 10.04
> >
> > I tried the command "make visual" and I get this message:
> >
> > make: *** No rule to make target `visual'.  Stop.
> >
> > At that point, i just tried to install Register and Display separately with the make command, and went into the respective directories to try and configure it. Each time i tried to configure with this line in Register,
> >
> > ./configure --prefix=/usr/local/minc -with-build-path=/usr/local/minc --with-minc2 --with-x  && \ make clean && \ make -j4 && \ make install
> >
> >  I get this error message: configure: error: cannot find required library bicpl
> >
> > On my system it says bicpl is located in: /usr/local/minc/src/bicpl-1.4.6/Include/bicpl
> >
> > I added that to the configure line, in it still says it cannot find it.
> >
> > I'm kind of stuck right now and lost. Any help would greatly be appreciated.
> >
> > Thanks,
> >
> > Michael
> >
> >
> >
> >
> >
> >
> >
> > ________________________________________
> > From: minc-users-bounces at bic.mni.mcgill.ca [minc-users-bounces at bic.mni.mcgill.ca] On Behalf Of Vladimir S. FONOV [vladimir.fonov at gmail.com]
> > Sent: Friday, March 04, 2011 4:43 PM
> > To: MINC users mailing list
> > Subject: [MINC-users] build almost everything minc Makefile and git     repository for EZminc
> >
> > Hello Everybody,
> >
> > in an effort to simplify minc installation I have made publicly
> > available a "build almost everything minc" makefile:
> >
> > https://github.com/vfonov/EZminc/raw/master/build_quarantine/Makefile
> >
> > The main purpose of it is to build most of the publicly available minc
> > tools inside a quarantine with minimum dependencies on the system
> > libraries. So, everything is compiled statically.
> >
> > Following packages are built by default:
> >
> > netcdf-4.0.1 hdf5-1.8.6 minc-2.1.00 bicpl-1.4.6 ebtks-1.6.4
> > oobicpl-0.4.4 N3-1.12.0 classify-1.1.0 conglomerate-1.6.6
> > mni_autoreg-0.99.6 mni_perllib-0.08 mincblob-1.2.1 mincmorph-1.4
> > ray_trace-1.0.3 glim_image-1.2 InsightToolkit-3.20.0 fftw-3.2.2
> > cmake-2.8.4 gsl-1.14 Getopt-Tabular-0.3 ezminc-r83 netpbm-10.35.74
> >
> >
> > following packages may also be built if needed:
> >
> > Register-1.4.0 Display-1.5.0
> > fltk-1.3.x-r7725 vtk-5.6.1
> >
> > To use:
> >
> > make PREFIX=<location of your quarantine> TEMP=<location where packages
> > will be built> PARALLEL_BUILD=-j<number of CPUs available> all
> >
> > Also, as you can notice I have created a clone of EZminc repository on
> > the github:  https://github.com/vfonov/EZminc , hopefully it will be
> > easier to use it this way.
> >
> >
> > --
> > Best regards,
> >  Vladimir S. FONOV ~ v.s.fonov  <at> ilmarin.info
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users