[MINC-users] best_nonlin_reg.pl ?

[Lisa F. Akiyama]

Hello,

I am using volgenmodel to create a model. I have installed Octave, but I am
still getting the following error and can't figure out what is the issue:

...bestlinreg.xfm genmodel-work/07/avgxfm.xfm
> Processing:........................miicv_attach: MINC package entry point
> ncvarid: ncid -1: NetCDF: Not a valid ID

Died at /usr/local/bic/bin/xfmavg line 310.
> Died at /usr/local/bic/bin/volgenmodel line 656.


I've tried using volgenmodel for two different fit.conf settings and get the
same error at
about the same time point in the course of running this script.
This error appears some point after the "07" folder and some, if not all, of
their contents are created in the working directory.

 What could be some possible causes? Am I missing some other required
script?

Thanks.


Best,
Lisa
 ______________________________




On Thu, Mar 3, 2011 at 11:08 AM, Lisa F. Akiyama <lrisa87 at uw.edu> wrote:

> Hi Andrew,
>
> I did not have Octave installed.
> Right now I am re-running volgenmodel after I installed Octave
> and so far it seems like it is chugging along without any errors at all.
>
> Thanks for all the tips and suggestions!
>
>
> Best,
> Lisa
>
>
>
>
>
> On Thu, Mar 3, 2011 at 5:15 AM, Andrew Janke <a.janke at gmail.com> wrote:
>
>> Hi Lisa,
>>
>> >> Died at /usr/local/bic/bin/xfmavg line 310.
>> >> Died at /usr/local/bic/bin/volgenmodel line 656.
>> >
>> > The output file that I specified the name of is no where to be found in
>> the
>> > workdir or the dir where I have stored my input files.
>>
>> I think the output is a big misleading in that I think the problem is
>> in the transform averaging not in the fitting. Do you have octave
>> installed?  xfmavg uses this.
>>
>> perhaps if you add a -verbose argument things might become a bit more
>> clear?  volgenmodel is designed such that you can just re-run whatever
>> you did last and it will pick up from where it left off.
>>
>> There is even a copy of the original command you used in the
>> genmodel-work directory.
>>
>>
>> a
>> _______________________________________________
>> MINC-users at bic.mni.mcgill.ca
>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>
>
>