[MINC-users] minc tools crash in matlab

[Claude LEPAGE]

Pierre,

I don't know how this mincbundle was created, but it looks
like it's looking for dynamic libraries (.so). Add the path
of libminc2.so.1 (should be somewhere in your mincbundle)
to LD_LIBRARY_PATH environment variable. 

Also, this mincbundle is old. minc 2.0.14. This will not
work well with your fmri studies.

Claude


> I just installed the "mincbundle" package on my laptop (with ubuntu hardy).
> The installation went smoothly and everything I tried so far in the shell
> worked just fine. Unfortunately, when I start Matlab (7.9.0, R2009b) and try
> to use the minc tools via system calls I get an error :
>
> >> ! mincinfo anat_subject1.mnc.gz
> mincinfo: symbol lookup error: /usr/lib/libminc2.so.1: undefined symbol:
> ncerr
>
> In a shell, the "mincinfo -version" gives :
>
> program: 2.0.14
> libminc: 2.0.14
> netcdf : "3.6.2" of Feb  8 2008 16:40:20 $
> HDF5   : 1.6.5
>
> >From Octave everything works fine. If I source the CIVET quarantine
> "Feb-14-2008", I don't get any error in matlab.
>
> Any thoughts about how to fix that ?
>
> Pierre
>
> -- 
> Pierre Bellec
> Post-doctoral fellow
> McConnel Brain Imaging Center, Webster 2B
> Montreal Neurological Institute
> 3801 University Street
> Montreal, Quebec, Canada H3A 2B4
> http://wiki.bic.mni.mcgill.ca/index.php/PierreBellec
> tel:       (001)(514) 398 5220
> fax:      (001)(514) 398 8948
> _______________________________________________
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