[MINC-users] minc tools crash in matlab

[Alex Zijdenbos]

Hi Pierre,

As far as I know, 'mincbundle' for Hardy contains (at least) 2.0.17,
and installs in /usr/local/bic, not /usr as your error message
suggests. I suspect you may have also installed the minc-tools package
which lives in the Hardy repositories, but which is rather
outdated/obsolete. See what happens if you run 'apt-get remove
libminc2-1'.

-- Alex

On Sat, Feb 20, 2010 at 5:59 PM, Claude LEPAGE <claude at bic.mni.mcgill.ca> wrote:
> Pierre,
>
> I don't know how this mincbundle was created, but it looks
> like it's looking for dynamic libraries (.so). Add the path
> of libminc2.so.1 (should be somewhere in your mincbundle)
> to LD_LIBRARY_PATH environment variable.
>
> Also, this mincbundle is old. minc 2.0.14. This will not
> work well with your fmri studies.
>
> Claude
>
>
>> I just installed the "mincbundle" package on my laptop (with ubuntu hardy).
>> The installation went smoothly and everything I tried so far in the shell
>> worked just fine. Unfortunately, when I start Matlab (7.9.0, R2009b) and try
>> to use the minc tools via system calls I get an error :
>>
>> >> ! mincinfo anat_subject1.mnc.gz
>> mincinfo: symbol lookup error: /usr/lib/libminc2.so.1: undefined symbol:
>> ncerr
>>
>> In a shell, the "mincinfo -version" gives :
>>
>> program: 2.0.14
>> libminc: 2.0.14
>> netcdf : "3.6.2" of Feb  8 2008 16:40:20 $
>> HDF5   : 1.6.5
>>
>> >From Octave everything works fine. If I source the CIVET quarantine
>> "Feb-14-2008", I don't get any error in matlab.
>>
>> Any thoughts about how to fix that ?
>>
>> Pierre
>>
>> --
>> Pierre Bellec
>> Post-doctoral fellow
>> McConnel Brain Imaging Center, Webster 2B
>> Montreal Neurological Institute
>> 3801 University Street
>> Montreal, Quebec, Canada H3A 2B4
>> http://wiki.bic.mni.mcgill.ca/index.php/PierreBellec
>> tel:       (001)(514) 398 5220
>> fax:      (001)(514) 398 8948
>> _______________________________________________
>> MINC-users at bic.mni.mcgill.ca
>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>
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