[MINC-users] mincresample center offset

[Jon Erik Ween]

Thanks for that, Vladimir. I notice that none of the models/templates  
are skull stripped. Do you register the native, target  MRI (with  
skull, meninges, etc) with these or an intensity normalized, skull  
stripped image?

Thanks

Jon

Soli Deo Gloria

Jon Erik Ween, MD, MS
Scientist, Kunin-Lunenfeld Applied Research Unit
Director, Stroke Clinic, Brain Health Clinic, Baycrest Centre
Assistant Professor, Dept. of Medicine, Div. of Neurology
     University of Toronto Faculty of Medicine

Kimel Family Building, 6th Floor, Room 644
Baycrest Centre
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Toronto, Ontario M6A 2E1
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Phone: 416-785-2500 x3648
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Email: jween at klaru-baycrest.on.ca


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On 19-Mar-09, at 12:30 AM, Vladimir S. Fonov wrote:

> Hello ,
>
> Jon Erik Ween wrote:
>> In trying to register a target brain to an atlas, things get offset
>> (see attached picture), I'm thinking due to something I'm leaving out
>> about world coordinates in creating the transform. What am I missing?
> Hmmm, no picture?
>
>>
>> bash-3.2$ mritoself  /usr/local/share/mni_autoreg/
>> icbm_template_1.00mm_bet.mnc 14017_083005_3dvol_bet.mnc
>> 14017_083005_3dvol
>
> mritoself is supposed to be used to register volumes from the same
> subjects but with different modalities, so probably this is not what  
> you
> want.
>
> Also /usr/local/share/mni_autoreg/icbm_template_1.00mm_bet.mnc doesn't
> seem to be a valid template. Unless you created it yourself.
> Standard way of registering to icbm152 template  would be like this:
>
> mritotal -model icbm_avg_152_t1_tal_lin 14017_083005_3dvol_bet.mnc
> 14017_083005_3dvol.xfm
> -- 
> Best regards,
>  Vladimir S. Fonov ~ vladimir.fonov <at> gmail.com
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