[MINC-users] minc blur (mni_autoreg)

[Jason Lerch]

On 12-Sep-06, at 9:47 AM, Penhune Lab wrote:

> wow!! --enable-minc2 did the trick!!!
> i wish i had asked this question before, i spent a week trying to  
> fix that
> before getting to the mailing list
> i looked for that switch in the minc2 documentation (INSTALL and  
> README) and
> its not there, maybe i didn't look in the right place.
>
> What i find strange is that everything compiled fine using --with- 
> minc2.
> register, xdisp and even most of mni_autoreg. only mincblur didn't  
> compile
>
> Andrew, when you say minc2 is still experimental, does it mean, we  
> don't
> support (recommend) it yet or does it mean, don't use it because  
> the results
> might be wrong?

We've been using minc2 for a while now, and it is quite stable and  
has not produced incorrect results in a long while! So I would not  
worry about it being experimental anymore ...

Jason

> I didn't know myself that minc2 was still experimental and that 1.4  
> was the
> latest stable version; maybe that should be mentioned somewhere  
> visible
> (like in the filename?)
>
> Thanks a lot for the help!
>
> Sincerely,
> Alejandro Endo
>
>
> On 9/11/06, Jason Lerch <jason at bic.mni.mcgill.ca> wrote:
>>
>> Did you compile minc2 with the ''--enable-minc2" command line option?
>> By default minc2 does not compile the newer hdf5 support in (why this
>> is the default I cannot fathom).
>>
>> Jason
>>
>> On 11-Sep-06, at 6:57 PM, Penhune Lab wrote:
>>
>>> Hello everyone
>>> Im trying to install mni_autoreg but im getting a problem when i
>>> try to
>>> compile mincblur:
>>>
>>> ...
>>> gradmag_volume.o: In function `build_vol_info':
>>> /home/vp/fMRI/mni_autoreg-0.99.2/mincblur/gradmag_volume.c:330:
>>> undefined
>>> reference to `MI2varinq'
>>> /home/vp/fMRI/mni_autoreg-0.99.2/mincblur/gradmag_volume.c:335:
>>> undefined
>>> reference to `MI2varinq'
>>> gradmag_volume.o: In function `make_curvature_volumes':
>>> /home/vp/fMRI/mni_autoreg-0.99.2/mincblur/gradmag_volume.c:1275:
>>> undefined
>>> reference to `MI2attput'
>>> gradmag_volume.o: In function `make_gradmag_volumes':
>>> /home/vp/fMRI/mni_autoreg-0.99.2/mincblur/gradmag_volume.c:1127:
>>> undefined
>>> reference to `MI2attput'
>>> collect2: ld returned 1 exit status
>>> make: *** [mincblur] Error 1
>>>
>>>
>>> all those undefined references are part of minc_compat.c but i cant
>>> seem to
>>> tell the compiler to use the minc_compat.o file that i created when
>>> installing minc2
>>>
>>> any ideas? has anyone else encountered this??
>>>
>>> im using linux mandriva 2006
>>> kernel 2.6
>>>
>>> thank you very much for your time
>>>
>>> --
>>> Laboratory for Motor Learning and Neural Plasticity
>>> Dr. Virginia Penhune
>>> Department of Psychology, Concordia University
>>> SP-A 244, 7141 Sherbrooke St. W
>>> Montreal, QC  H4B 1R6  Canada
>>> (514)848-2424 ext. 7567
>>> http://psychology.concordia.ca/fac/penhune/winindex.html
>>> _______________________________________________
>>> MINC-users at bic.mni.mcgill.ca
>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>
>> _______________________________________________
>> MINC-users at bic.mni.mcgill.ca
>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>
>
>
>
> -- 
> Laboratory for Motor Learning and Neural Plasticity
> Dr. Virginia Penhune
> Department of Psychology, Concordia University
> SP-A 244, 7141 Sherbrooke St. W
> Montreal, QC  H4B 1R6  Canada
> (514)848-2424 ext. 7567
> http://psychology.concordia.ca/fac/penhune/winindex.html
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users