[MINC-users] minc blur (mni_autoreg)

[Penhune Lab]

wow!! --enable-minc2 did the trick!!!
i wish i had asked this question before, i spent a week trying to fix that
before getting to the mailing list
i looked for that switch in the minc2 documentation (INSTALL and README) and
its not there, maybe i didn't look in the right place.

What i find strange is that everything compiled fine using --with-minc2.
register, xdisp and even most of mni_autoreg. only mincblur didn't compile

Andrew, when you say minc2 is still experimental, does it mean, we don't
support (recommend) it yet or does it mean, don't use it because the results
might be wrong?
I didn't know myself that minc2 was still experimental and that 1.4 was the
latest stable version; maybe that should be mentioned somewhere visible
(like in the filename?)

Thanks a lot for the help!

Sincerely,
Alejandro Endo


On 9/11/06, Jason Lerch <jason at bic.mni.mcgill.ca> wrote:
>
> Did you compile minc2 with the ''--enable-minc2" command line option?
> By default minc2 does not compile the newer hdf5 support in (why this
> is the default I cannot fathom).
>
> Jason
>
> On 11-Sep-06, at 6:57 PM, Penhune Lab wrote:
>
> > Hello everyone
> > Im trying to install mni_autoreg but im getting a problem when i
> > try to
> > compile mincblur:
> >
> > ...
> > gradmag_volume.o: In function `build_vol_info':
> > /home/vp/fMRI/mni_autoreg-0.99.2/mincblur/gradmag_volume.c:330:
> > undefined
> > reference to `MI2varinq'
> > /home/vp/fMRI/mni_autoreg-0.99.2/mincblur/gradmag_volume.c:335:
> > undefined
> > reference to `MI2varinq'
> > gradmag_volume.o: In function `make_curvature_volumes':
> > /home/vp/fMRI/mni_autoreg-0.99.2/mincblur/gradmag_volume.c:1275:
> > undefined
> > reference to `MI2attput'
> > gradmag_volume.o: In function `make_gradmag_volumes':
> > /home/vp/fMRI/mni_autoreg-0.99.2/mincblur/gradmag_volume.c:1127:
> > undefined
> > reference to `MI2attput'
> > collect2: ld returned 1 exit status
> > make: *** [mincblur] Error 1
> >
> >
> > all those undefined references are part of minc_compat.c but i cant
> > seem to
> > tell the compiler to use the minc_compat.o file that i created when
> > installing minc2
> >
> > any ideas? has anyone else encountered this??
> >
> > im using linux mandriva 2006
> > kernel 2.6
> >
> > thank you very much for your time
> >
> > --
> > Laboratory for Motor Learning and Neural Plasticity
> > Dr. Virginia Penhune
> > Department of Psychology, Concordia University
> > SP-A 244, 7141 Sherbrooke St. W
> > Montreal, QC  H4B 1R6  Canada
> > (514)848-2424 ext. 7567
> > http://psychology.concordia.ca/fac/penhune/winindex.html
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>



-- 
Laboratory for Motor Learning and Neural Plasticity
Dr. Virginia Penhune
Department of Psychology, Concordia University
SP-A 244, 7141 Sherbrooke St. W
Montreal, QC  H4B 1R6  Canada
(514)848-2424 ext. 7567
http://psychology.concordia.ca/fac/penhune/winindex.html