[MINC-users] fmr_preprocess
Andrew Janke
a.janke at gmail.com
Mon Jun 26 09:41:33 EDT 2006
Hi Sheng,
The sort of problems you are having are really not MINC related but
rather linux related, as such you will be better of to use one of the
more generic linux support groups or Fedora groups.
My only observation is that Fedora 4 is a somwhat older distribution,
whilst a re-install may sound like a rather drastic step to solve a
perl problem, it ay be worth it in the long run. We use a debian based
system here at the BIC and other places. A more friendly Debian based
system is Ubuntu.
a
On 6/26/06, Sheng Bao <forrest.bao at gmail.com> wrote:
> hi, guys, actually these days I am help Xingfeng Lee to install software he
> needed to run his program.
> I have downloaded the Getopt::Tabular from CPAN.
> But I encountered the following problem when I did exactly as what the
> instruction said
>
> [root at ambrose Getopt-Tabular-0.3]# perl Makefile.PL
> Config.pm <http://config.pm/> did not return a true value at
> /usr/lib/perl5/5.8.6/ExtUtils/MakeMaker.pm line 9.
> BEGIN failed--compilation aborted at
> /usr/lib/perl5/5.8.6/ExtUtils/MakeMaker.pm line 9.
> Compilation failed in require at Makefile.PL line 1.
> BEGIN failed--compilation aborted at Makefile.PL line 1.
>
> Coz Dr.Li came to Nanjing Jingling Hospital to cooperate a research with a
> friend of mine, I installed the Fedora Core 4 system, the Matlab and other
> tools(such as display, regiser, minc, etc.). Here in China, only quite a few
> people know how to use Linux operating system and I have never used Perl
> programming language before. Before I help Dr.Li, my friend has asked many
> other people to prepare the workstation. But they failed. So I was involved
> in this issue just these days. I do need some intructions to help Dr. Li
> finish his experiment.
>
> Cheers,
> Sheng
>
> On 6/26/06, Andrew Janke <a.janke at gmail.com> wrote:
> >
> > Li,
> >
> > You will have to download and install Getopt::Tabular from www.cpan.org
> >
> >
> > a
> >
> > On 6/25/06, xingfeng lee <spmlxf at yahoo.com> wrote:
> > > Hi Andrew,
> > > Thank you very much, the new problem is:
> > >
> > > [root at ambrose Test]# fmr_preprocess
> > > Can't locate Getopt/Tabular.pm in @INC (@INC contains:
> > /usr/lib/perl5/site_perl/5.8.6/i386-linux-thread-multi
> > /usr/lib/perl5/site_perl/5.8.5/i386-linux-thread-multi
> > /usr/lib/perl5/site_perl/5.8.4/i386-linux-thread-multi
> > /usr/lib/perl5/site_perl/5.8.3/i386-linux-thread-multi
> > /usr/lib/perl5/site_perl/5.8.6 /usr/lib/perl5/site_perl/5.8.5
> > /usr/lib/perl5/site_perl/5.8.4 /usr/lib/perl5/site_perl/5.8.3
> > /usr/lib/perl5/site_perl
> > /usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi
> > /usr/lib/perl5/vendor_perl/5.8.5/i386-linux-thread-multi
> > /usr/lib/perl5/vendor_perl/5.8.4/i386-linux-thread-multi
> > /usr/lib/perl5/vendor_perl/5.8.3/i386-linux-thread-multi
> > /usr/lib/perl5/vendor_perl/5.8.6 /usr/lib/perl5/vendor_perl/5.8.5
> > /usr/lib/perl5/vendor_perl/5.8.4 /usr/lib/perl5/vendor_perl/5.8.3
> > /usr/lib/perl5/vendor_perl /usr/lib/perl5/5.8.6/i386-linux-thread-multi
> > /usr/lib/perl5/5.8.6 .) at /bin/fmr_preprocess line 40.
> > > BEGIN failed--compilation aborted at /bin/fmr_preprocess line 40.
> > >
> > >
> > > All the best,
> > > Li
> > >
> > >
> > >
> > > Andrew Janke <a.janke at gmail.com > wrote: Hi Li,
> > >
> > > I suspect you will have to set the execute bit for the file. ie:
> > >
> > > $ chmod +x fmr_preprocess
> > >
> > >
> > > a
> > >
> > > On 6/23/06, xingfeng lee wrote:
> > > > Dear MINC experts:
> > > >
> > > > Could you help?
> > > > I came cross a problem when i did fmri data realignment. I copied the
> > function : fmr_preprocess from my computer at McGill to the bin directory of
> > my computer in China, but it did not work. I remember that this function
> > does not need to install, just copy this function to the bin directory. The
> > error message was:
> > > > [root at ambrose qiu_yan_li_20060611_130900]# fmr_preprocess
> > qiu_yan_li_20060611_130900_3_mri.mnc
> > > > bash: /bin/fmr_preprocess: Permission denied
> > > > Could you give some advises?
> > > >
> > > > If it need install, where should i download it, and how to install
> > it?
> > > >
> > > > Thank you very much and have a nice weekend.
> > > > all the best,
> > > > Li
> > > >
> > > >
> > > > ---------------------------------
> > > > Ring'em or ping'em. Make PC-to-phone calls as low as 1¢/min with
> > Yahoo! Messenger with Voice.
> > > > _______________________________________________
> > > > MINC-users at bic.mni.mcgill.ca
> > > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > > >
> > >
> > >
> > > --
> > > Andrew Janke (a.janke at gmail.com || http://a.janke.googlepages.com/)
> > > Canada->Montreal Cell: +1 (514) 924
> > 2012
> > >
> > > _______________________________________________
> > > MINC-users at bic.mni.mcgill.ca
> > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > >
> > >
> > >
> > > Andrew Janke <a.janke at gmail.com> wrote: Hi Li,
> > >
> > > I suspect you will have to set the execute bit for the file. ie:
> > >
> > > $ chmod +x fmr_preprocess
> > >
> > >
> > > a
> > >
> > > On 6/23/06, xingfeng lee wrote:
> > > > Dear MINC experts:
> > > >
> > > > Could you help?
> > > > I came cross a problem when i did fmri data realignment. I copied the
> > function : fmr_preprocess from my computer at McGill to the bin directory of
> > my computer in China, but it did not work. I remember that this function
> > does not need to install, just copy this function to the bin directory. The
> > error message was:
> > > > [root at ambrose qiu_yan_li_20060611_130900]# fmr_preprocess
> > qiu_yan_li_20060611_130900_3_mri.mnc
> > > > bash: /bin/fmr_preprocess: Permission denied
> > > > Could you give some advises?
> > > >
> > > > If it need install, where should i download it, and how to install
> > it?
> > > >
> > > > Thank you very much and have a nice weekend.
> > > > all the best,
> > > > Li
> > > >
> > > >
> > > > ---------------------------------
> > > > Ring'em or ping'em. Make PC-to-phone calls as low as 1¢/min with
> > Yahoo! Messenger with Voice.
> > > > _______________________________________________
> > > > MINC-users at bic.mni.mcgill.ca
> > > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > > >
> > >
> > >
> > > --
> > > Andrew Janke (a.janke at gmail.com || http://a.janke.googlepages.com/)
> > > Canada->Montreal Cell: +1 (514) 924
> > 2012
> > >
> > > _______________________________________________
> > > MINC-users at bic.mni.mcgill.ca
> > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > >
> > >
> > >
> > > ---------------------------------
> > > Sneak preview the all-new Yahoo.com. It's not radically different. Just
> > radically better.
> > > _______________________________________________
> > > MINC-users at bic.mni.mcgill.ca
> > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > >
> >
> >
> > --
> > Andrew Janke (a.janke at gmail.com || http://a.janke.googlepages.com/)
> > Canada->Montreal Cell: +1 (514) 924 2012
> >
> >
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >
>
>
>
> --
> EE is no more about circuits than CS is about computers.
>
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> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>
--
Andrew Janke (a.janke at gmail.com || http://a.janke.googlepages.com/)
Canada->Montreal Cell: +1 (514) 924 2012
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