[MINC-users] Automated Trimming

[Andrew Janke]

If you happen to know the centre of the head (via a COG/COM
calculation) I guess you could use 'make_phantom' that is part of
mni-autoreg.

>From there it would be a simple mask calculation using either mincmath
or minccalc.


a

On 6/22/06, Faden, Eric (NIH/NIMH) [F] <fadeneric at mail.nih.gov> wrote:
> I am working on a script to generate brainmasks for a set of macaque scans we have, but since the scans have different amounts of neck in them my script is having some issues.  I was wondering if there is a quick way using minccalc or something to draw a circular mask and cut everything outside of it?  or if anyone has a trick for creating a very gross mask I could use to remove the neck?
>
> -Eric
>
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Andrew Janke   (a.janke at gmail.com || http://a.janke.googlepages.com/)
Canada->Montreal                                   Cell: +1 (514) 924 2012