[MINC-users] image transfer from analyze to minc
Runa Parveen
runa at medphys.ucl.ac.uk
Mon Feb 27 23:04:11 EST 2006
Hi All,
Many thanks who has helped me to use analyze file format. actually, minc
1.4 was not installed unluckily, But I don't understand other commands were
working, like as, minctoraw, mincstats, rawtominc, etc.
Anyway, I need to have another suggestion: After transfer the into minc and
apply NU correction, then return back to analyze format, the images tranfer
in 32 bit real which I don't want. I like to return back after nu
correction in the previous values before correction.
The suggestion is very much welcome to sort this out.
Many thanks
Runa
At 14:36 25/02/2006 -0500, you wrote:
>Hi Runa,
>
>When you say "it did not recognize", do you mean that the command was not
>found, or that the the command could not recognize the Analyze file you
>were trying to convert? Can you give me the specific error message?
>
> -bert
>
>On Sat, 25 Feb 2006, Runa Parveen wrote:
>
> > Hi Sylvain,
> >
> > I have installed this package but when I tried to use nii2mnc, it did not
> > recognize, what would be the problem, please let me know.
> >
> > thanks, runa
> > At 12:10 25/02/2006 -0500, you wrote:
> >
> > >Hello
> > >
> > >I believe Andrew no longer supports ana2mnc.
> > >
> > >You should be using nii2mnc which recognizes Analyze and NIfTI-1 formats.
> > >
> > >mnc2nii and nii2mnc are part of MINC release 1.4, available here:
> > >
> > >http://packages.bic.mni.mcgill.ca/tgz/minc-1.4.tar.gz
> > >
> > >S
> > >
> > >On Sat, 25 Feb 2006, Jonathan LAU wrote:
> > >
> > > > Hi Runa,
> > > >
> > > > Have you tried ana2mnc?
> > > > http://www.cmr.uq.edu.au/~rotor/software/
> > > >
> > > > Cheers,
> > > > jonathan
> > > >
> > > > On 2/25/06, Runa Parveen <runa at medphys.ucl.ac.uk> wrote:
> > > > > Hi all,
> > > > >
> > > > > I am working on Linux mode of this package. would you please
> suggest me
> > > > > which command i will use for transfer image analyze format to
> minc format
> > > > > for the purpose of NU correction.
> > > > >
> > > > > Many thanks,
> > > > >
> > > > > Yours sincerely,
> > > > >
> > > > > Runa
> > > > >
> > > > > ********************************************************************
> > > > >
> > > > > * Runa
> > > Parveen **
> > > > > * PhD
> > > Student **
> > > > > * Medical Imaging
> Group **
> > > > > * Dept. of Medical Physics & Bioengineering **
> > > > > * University College
> London **
> > > > > * 2nd Floor, New Malet Place Engineering Building **
> > > > > * Gower Street, off Torrington
> Place **
> > > > > * London WC1E 6JA **
> > > > > *
> > > > > UK
> > > > > **
> > > > > * Tel. +44 (0) 20 7679 0246 (Dept.)
> > > > > +44 (0) 7984 084 959
> (mob.) **
> > > > > * Fax.+44 (0) 20 7679 0255
> (Dept.) **
> > > > > * e-mail: runa at medphys.ucl.ac.uk **
> > > > > *********************************************************************
> > > > >
> > > > > _______________________________________________
> > > > > MINC-users at bic.mni.mcgill.ca
> > > > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > > > >
> > > >
> > > > _______________________________________________
> > > > MINC-users at bic.mni.mcgill.ca
> > > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > > >
> > >
> > >---
> > >Sylvain Milot (sylvain at bic.mni.mcgill.ca)
> > > (trinity at bic.mni.mcgill.ca)
> > >Brain Imaging Centre
> > >Montreal Neurological Institute
> > >Webster 2B, Room 208
> > >Montreal, Qc., Canada, H3A 2B4
> > >Phone : (514) 398-4965, Fax: 398-8948
> > >Mobile : (514) 712-1768
> > >Office : 527 Av Des Pins O., Room 204
> > > Montreal, Qc., H2W 1S4
> > >
> > >
> > >
> > >_______________________________________________
> > >MINC-users at bic.mni.mcgill.ca
> > >http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >
> > Yours sincerely,
> >
> > Runa
> >
> > ********************************************************************
> >
> > * Runa
> Parveen **
> > * PhD
> Student **
> > * Medical Imaging Group **
> > * Dept. of Medical Physics & Bioengineering **
> > * University College London **
> > * 2nd Floor, New Malet Place Engineering Building **
> > * Gower Street, off Torrington Place **
> > * London WC1E 6JA **
> > *
> > UK
> > **
> > * Tel. +44 (0) 20 7679 0246 (Dept.)
> > +44 (0) 7984 084 959 (mob.) **
> > * Fax.+44 (0) 20 7679 0255 (Dept.) **
> > * e-mail: runa at medphys.ucl.ac.uk **
> > *********************************************************************
> >
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >
>
>_______________________________________________
>MINC-users at bic.mni.mcgill.ca
>http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
Yours sincerely,
Runa
********************************************************************
* Runa Parveen **
* PhD Student **
* Medical Imaging Group **
* Dept. of Medical Physics & Bioengineering **
* University College London **
* 2nd Floor, New Malet Place Engineering Building **
* Gower Street, off Torrington Place **
* London WC1E 6JA **
*
UK
**
* Tel. +44 (0) 20 7679 0246 (Dept.)
+44 (0) 7984 084 959 (mob.) **
* Fax.+44 (0) 20 7679 0255 (Dept.) **
* e-mail: runa at medphys.ucl.ac.uk **
*********************************************************************
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