[MINC-users] image transfer from analyze to minc
Runa Parveen
runa at medphys.ucl.ac.uk
Sat Feb 25 15:58:23 EST 2006
Hi Andrew,
I installed minc version 1.4 and I am looking for the command nii2mnc, But
not found, other commands in there. don't know what's the problem?
Runa
At 06:36 26/02/2006 +1000, you wrote:
>Hi Runa,
>
>nii2mnc is part of minc as of version 1.3 I suggest you install
>version 1.4 and them you will have all the converters included. (they
>will be installed int he same place as the mincxxxx binaries).
>
>
>Andrew
>
>
>On 2/26/06, Runa Parveen <runa at medphys.ucl.ac.uk> wrote:
> > Hi Bert:
> >
> > I used the command
> > nii2mnc t_r.hdr xt_r.mnc
> >
> > but it said command not found.
> >
> > Is there anything I missed when I installed?
> >
> > Thanks,
> > Runa
> >
> > At 14:36 25/02/2006 -0500, you wrote:
> > >Hi Runa,
> > >
> > >When you say "it did not recognize", do you mean that the command was not
> > >found, or that the the command could not recognize the Analyze file you
> > >were trying to convert? Can you give me the specific error message?
> > >
> > > -bert
> > >
> > >On Sat, 25 Feb 2006, Runa Parveen wrote:
> > >
> > > > Hi Sylvain,
> > > >
> > > > I have installed this package but when I tried to use nii2mnc, it
> did not
> > > > recognize, what would be the problem, please let me know.
> > > >
> > > > thanks, runa
> > > > At 12:10 25/02/2006 -0500, you wrote:
> > > >
> > > > >Hello
> > > > >
> > > > >I believe Andrew no longer supports ana2mnc.
> > > > >
> > > > >You should be using nii2mnc which recognizes Analyze and NIfTI-1
> formats.
> > > > >
> > > > >mnc2nii and nii2mnc are part of MINC release 1.4, available here:
> > > > >
> > > > >http://packages.bic.mni.mcgill.ca/tgz/minc-1.4.tar.gz
> > > > >
> > > > >S
> > > > >
> > > > >On Sat, 25 Feb 2006, Jonathan LAU wrote:
> > > > >
> > > > > > Hi Runa,
> > > > > >
> > > > > > Have you tried ana2mnc?
> > > > > > http://www.cmr.uq.edu.au/~rotor/software/
> > > > > >
> > > > > > Cheers,
> > > > > > jonathan
> > > > > >
> > > > > > On 2/25/06, Runa Parveen <runa at medphys.ucl.ac.uk> wrote:
> > > > > > > Hi all,
> > > > > > >
> > > > > > > I am working on Linux mode of this package. would you please
> > > suggest me
> > > > > > > which command i will use for transfer image analyze format to
> > > minc format
> > > > > > > for the purpose of NU correction.
> > > > > > >
> > > > > > > Many thanks,
> > > > > > >
> > > > > > > Yours sincerely,
> > > > > > >
> > > > > > > Runa
> > > > > > >
> > > > > > >
> ********************************************************************
> > > > > > >
> > > > > > > * Runa
> > > > > Parveen **
> > > > > > > * PhD
> > > > >
> Student **
> > > > > > > * Medical Imaging
> > > Group **
> > > > > > > * Dept. of Medical Physics & Bioengineering **
> > > > > > > * University College
> > > London **
> > > > > > > * 2nd Floor, New Malet Place Engineering Building **
> > > > > > > * Gower Street, off Torrington
> > > Place **
> > > > > > > * London WC1E
> 6JA **
> > > > > > > *
> > > > > > > UK
> > > > > > > **
> > > > > > > * Tel. +44 (0) 20 7679 0246 (Dept.)
> > > > > > > +44 (0) 7984 084 959
> > > (mob.) **
> > > > > > > * Fax.+44 (0) 20 7679 0255
> > > (Dept.) **
> > > > > > > * e-mail:
> runa at medphys.ucl.ac.uk **
> > > > > > >
> *********************************************************************
> > > > > > >
> > > > > > > _______________________________________________
> > > > > > > MINC-users at bic.mni.mcgill.ca
> > > > > > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > > > > > >
> > > > > >
> > > > > > _______________________________________________
> > > > > > MINC-users at bic.mni.mcgill.ca
> > > > > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > > > > >
> > > > >
> > > > >---
> > > > >Sylvain Milot (sylvain at bic.mni.mcgill.ca)
> > > > > (trinity at bic.mni.mcgill.ca)
> > > > >Brain Imaging Centre
> > > > >Montreal Neurological Institute
> > > > >Webster 2B, Room 208
> > > > >Montreal, Qc., Canada, H3A 2B4
> > > > >Phone : (514) 398-4965, Fax: 398-8948
> > > > >Mobile : (514) 712-1768
> > > > >Office : 527 Av Des Pins O., Room 204
> > > > > Montreal, Qc., H2W 1S4
> > > > >
> > > > >
> > > > >
> > > > >_______________________________________________
> > > > >MINC-users at bic.mni.mcgill.ca
> > > > >http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > > >
> > > > Yours sincerely,
> > > >
> > > > Runa
> > > >
> > > > ********************************************************************
> > > >
> > > > * Runa
> > > Parveen **
> > > > * PhD
> > > Student **
> > > > * Medical Imaging
> Group **
> > > > * Dept. of Medical Physics & Bioengineering **
> > > > * University College
> London **
> > > > * 2nd Floor, New Malet Place Engineering Building **
> > > > * Gower Street, off Torrington Place **
> > > > * London WC1E 6JA **
> > > > *
> > > > UK
> > > > **
> > > > * Tel. +44 (0) 20 7679 0246 (Dept.)
> > > > +44 (0) 7984 084 959
> (mob.) **
> > > > * Fax.+44 (0) 20 7679 0255 (Dept.) **
> > > > * e-mail: runa at medphys.ucl.ac.uk **
> > > > *********************************************************************
> > > >
> > > > _______________________________________________
> > > > MINC-users at bic.mni.mcgill.ca
> > > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > > >
> > >
> > >_______________________________________________
> > >MINC-users at bic.mni.mcgill.ca
> > >http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >
> > Yours sincerely,
> >
> > Runa
> >
> > ********************************************************************
> >
> > * Runa
> Parveen **
> > * PhD
> Student **
> > * Medical Imaging Group **
> > * Dept. of Medical Physics & Bioengineering **
> > * University College London **
> > * 2nd Floor, New Malet Place Engineering Building **
> > * Gower Street, off Torrington Place **
> > * London WC1E 6JA **
> > *
> > UK
> > **
> > * Tel. +44 (0) 20 7679 0246 (Dept.)
> > +44 (0) 7984 084 959 (mob.) **
> > * Fax.+44 (0) 20 7679 0255 (Dept.) **
> > * e-mail: runa at medphys.ucl.ac.uk **
> > *********************************************************************
> >
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> >
>
>
>--
>Andrew Janke (a.janke at gmail.com || www.cmr.uq.edu.au/~rotor)
>Canada->Montreal Cell: +1 (514) 924 2012
>
>_______________________________________________
>MINC-users at bic.mni.mcgill.ca
>http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
Yours sincerely,
Runa
********************************************************************
* Runa Parveen **
* PhD Student **
* Medical Imaging Group **
* Dept. of Medical Physics & Bioengineering **
* University College London **
* 2nd Floor, New Malet Place Engineering Building **
* Gower Street, off Torrington Place **
* London WC1E 6JA **
*
UK
**
* Tel. +44 (0) 20 7679 0246 (Dept.)
+44 (0) 7984 084 959 (mob.) **
* Fax.+44 (0) 20 7679 0255 (Dept.) **
* e-mail: runa at medphys.ucl.ac.uk **
*********************************************************************
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