[MINC-users] image transfer from analyze to minc
Andrew Janke
a.janke at gmail.com
Sat Feb 25 15:36:51 EST 2006
Hi Runa,
nii2mnc is part of minc as of version 1.3 I suggest you install
version 1.4 and them you will have all the converters included. (they
will be installed int he same place as the mincxxxx binaries).
Andrew
On 2/26/06, Runa Parveen <runa at medphys.ucl.ac.uk> wrote:
> Hi Bert:
>
> I used the command
> nii2mnc t_r.hdr xt_r.mnc
>
> but it said command not found.
>
> Is there anything I missed when I installed?
>
> Thanks,
> Runa
>
> At 14:36 25/02/2006 -0500, you wrote:
> >Hi Runa,
> >
> >When you say "it did not recognize", do you mean that the command was not
> >found, or that the the command could not recognize the Analyze file you
> >were trying to convert? Can you give me the specific error message?
> >
> > -bert
> >
> >On Sat, 25 Feb 2006, Runa Parveen wrote:
> >
> > > Hi Sylvain,
> > >
> > > I have installed this package but when I tried to use nii2mnc, it did not
> > > recognize, what would be the problem, please let me know.
> > >
> > > thanks, runa
> > > At 12:10 25/02/2006 -0500, you wrote:
> > >
> > > >Hello
> > > >
> > > >I believe Andrew no longer supports ana2mnc.
> > > >
> > > >You should be using nii2mnc which recognizes Analyze and NIfTI-1 formats.
> > > >
> > > >mnc2nii and nii2mnc are part of MINC release 1.4, available here:
> > > >
> > > >http://packages.bic.mni.mcgill.ca/tgz/minc-1.4.tar.gz
> > > >
> > > >S
> > > >
> > > >On Sat, 25 Feb 2006, Jonathan LAU wrote:
> > > >
> > > > > Hi Runa,
> > > > >
> > > > > Have you tried ana2mnc?
> > > > > http://www.cmr.uq.edu.au/~rotor/software/
> > > > >
> > > > > Cheers,
> > > > > jonathan
> > > > >
> > > > > On 2/25/06, Runa Parveen <runa at medphys.ucl.ac.uk> wrote:
> > > > > > Hi all,
> > > > > >
> > > > > > I am working on Linux mode of this package. would you please
> > suggest me
> > > > > > which command i will use for transfer image analyze format to
> > minc format
> > > > > > for the purpose of NU correction.
> > > > > >
> > > > > > Many thanks,
> > > > > >
> > > > > > Yours sincerely,
> > > > > >
> > > > > > Runa
> > > > > >
> > > > > > ********************************************************************
> > > > > >
> > > > > > * Runa
> > > > Parveen **
> > > > > > * PhD
> > > > Student **
> > > > > > * Medical Imaging
> > Group **
> > > > > > * Dept. of Medical Physics & Bioengineering **
> > > > > > * University College
> > London **
> > > > > > * 2nd Floor, New Malet Place Engineering Building **
> > > > > > * Gower Street, off Torrington
> > Place **
> > > > > > * London WC1E 6JA **
> > > > > > *
> > > > > > UK
> > > > > > **
> > > > > > * Tel. +44 (0) 20 7679 0246 (Dept.)
> > > > > > +44 (0) 7984 084 959
> > (mob.) **
> > > > > > * Fax.+44 (0) 20 7679 0255
> > (Dept.) **
> > > > > > * e-mail: runa at medphys.ucl.ac.uk **
> > > > > > *********************************************************************
> > > > > >
> > > > > > _______________________________________________
> > > > > > MINC-users at bic.mni.mcgill.ca
> > > > > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > > > > >
> > > > >
> > > > > _______________________________________________
> > > > > MINC-users at bic.mni.mcgill.ca
> > > > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > > > >
> > > >
> > > >---
> > > >Sylvain Milot (sylvain at bic.mni.mcgill.ca)
> > > > (trinity at bic.mni.mcgill.ca)
> > > >Brain Imaging Centre
> > > >Montreal Neurological Institute
> > > >Webster 2B, Room 208
> > > >Montreal, Qc., Canada, H3A 2B4
> > > >Phone : (514) 398-4965, Fax: 398-8948
> > > >Mobile : (514) 712-1768
> > > >Office : 527 Av Des Pins O., Room 204
> > > > Montreal, Qc., H2W 1S4
> > > >
> > > >
> > > >
> > > >_______________________________________________
> > > >MINC-users at bic.mni.mcgill.ca
> > > >http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > >
> > > Yours sincerely,
> > >
> > > Runa
> > >
> > > ********************************************************************
> > >
> > > * Runa
> > Parveen **
> > > * PhD
> > Student **
> > > * Medical Imaging Group **
> > > * Dept. of Medical Physics & Bioengineering **
> > > * University College London **
> > > * 2nd Floor, New Malet Place Engineering Building **
> > > * Gower Street, off Torrington Place **
> > > * London WC1E 6JA **
> > > *
> > > UK
> > > **
> > > * Tel. +44 (0) 20 7679 0246 (Dept.)
> > > +44 (0) 7984 084 959 (mob.) **
> > > * Fax.+44 (0) 20 7679 0255 (Dept.) **
> > > * e-mail: runa at medphys.ucl.ac.uk **
> > > *********************************************************************
> > >
> > > _______________________________________________
> > > MINC-users at bic.mni.mcgill.ca
> > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > >
> >
> >_______________________________________________
> >MINC-users at bic.mni.mcgill.ca
> >http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>
> Yours sincerely,
>
> Runa
>
> ********************************************************************
>
> * Runa Parveen **
> * PhD Student **
> * Medical Imaging Group **
> * Dept. of Medical Physics & Bioengineering **
> * University College London **
> * 2nd Floor, New Malet Place Engineering Building **
> * Gower Street, off Torrington Place **
> * London WC1E 6JA **
> *
> UK
> **
> * Tel. +44 (0) 20 7679 0246 (Dept.)
> +44 (0) 7984 084 959 (mob.) **
> * Fax.+44 (0) 20 7679 0255 (Dept.) **
> * e-mail: runa at medphys.ucl.ac.uk **
> *********************************************************************
>
> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>
--
Andrew Janke (a.janke at gmail.com || www.cmr.uq.edu.au/~rotor)
Canada->Montreal Cell: +1 (514) 924 2012
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