[MINC-users] Problem Installing mni_autoreg_model-1.1 with mni_perllib-0.07

[Gil Citro]

After a couple of days of trying to install the MNI tools they seem to
be working with one last problem.  Thanks for all the help so far!

When I try to install mni_autoreg_model-1.1 I get these errors

make  all-am
make[1]: Entering directory `/usr/local/mni/mni_autoreg_model-1.1'
make_model average_305
Using base filename average_305
Note that your input volume *must* be in Talairach space for this to work
** Making average_305_pad.mnc from average_305.mnc by resampling on
2mm grid and padding by 16mm
"split_path" is not exported by the MNI::FileUtilities module
Can't continue after import errors at /usr/local/bin/autocrop line 31
BEGIN failed--compilation aborted at /usr/local/bin/autocrop line 31.
** Building 16mm data for average_305
Error: opening MINC file "average_305_pad.mnc".
Error in mincblur in file mincblur.c, line 264
problems reading `average_305_pad.mnc'.
"split_path" is not exported by the MNI::FileUtilities module
Can't continue after import errors at /usr/local/bin/autocrop line 31
BEGIN failed--compilation aborted at /usr/local/bin/autocrop line 31.
(from miopen): Unable to open file 'average_305_16_blur.mnc'
ncvarid: ncid -1: Not a netCDF id
etc...
make[1]: *** No rule to make target `average_305_16_mask.mnc', needed
by `all-am'.  Stop.
make[1]: Leaving directory `/usr/local/mni/mni_autoreg_model-1.1'
make: *** [all] Error 2

It says that there's a problem with MNI::FileUtilities, and in fact
when I installed mni_perllib-0.07 I did get many errors on make test,
but the README suggests this may be due to overly strict tests, so I
ignored the failed tests at first.  Here are the results I got from
make test.  If anyone can suggest how to solve this last problem I'd
appreciate it.  Thanks again.

Gil

PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e"
"test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/batch-0........ok
t/batch-1......../usr/bin/at: invalid option -- J
Usage: at [-V] [-q x] [-f file] [-m] time
       atq [-V] [-q x]
       atrm [-V] [-q x] job ...
       batch [-V] [-f file] [-m]
t/batch-1........dubious
        Test returned status 0 (wstat 13, 0xd)
DIED. FAILED tests 1-21
        Failed 21/21 tests, 0.00% okay
t/batch-2......../usr/bin/at: invalid option -- J
Usage: at [-V] [-q x] [-f file] [-m] time
       atq [-V] [-q x]
       atrm [-V] [-q x] job ...
       batch [-V] [-f file] [-m]
Error closing pipe to batch:
 at t/batch-2.t line 53
`batch' exited with non-zero status code: 256
 at t/batch-2.t line 53
/usr/bin/at: invalid option -- J
Usage: at [-V] [-q x] [-f file] [-m] time
       atq [-V] [-q x]
       atrm [-V] [-q x] job ...
       batch [-V] [-f file] [-m]
t/batch-2........dubious
        Test returned status 0 (wstat 13, 0xd)
DIED. FAILED tests 1-3
        Failed 3/3 tests, 0.00% okay
t/checkdirs......Error in distribution -- t not writeable
Compilation failed in require at t/checkdirs.t line 19.
t/checkdirs......dubious
        Test returned status 255 (wstat 65280, 0xff00)
DIED. FAILED tests 1-42
        Failed 42/42 tests, 0.00% okay
t/checkfiles.....Error in distribution -- t not writeable
Compilation failed in require at t/checkfiles.t line 18.
t/checkfiles.....dubious
        Test returned status 255 (wstat 65280, 0xff00)
DIED. FAILED tests 1-41
        Failed 41/41 tests, 0.00% okay
t/datadir........ok
t/mincutil.......ok 6/22cp: cannot create regular file
`t/testcopy.mnc': Permission denied
cp failed at t/mincutil.t line 86.
t/mincutil.......dubious
        Test returned status 1 (wstat 256, 0x100)
DIED. FAILED tests 7-22
        Failed 16/22 tests, 27.27% okay
t/miscutil.......ok
t/numutil........ok
t/pathutil.......ok
t/searchfiles....Error in distribution -- t not writeable
Compilation failed in require at t/searchfiles.t line 19.
t/searchfiles....dubious
        Test returned status 255 (wstat 65280, 0xff00)
DIED. FAILED tests 1-19
        Failed 19/19 tests, 0.00% okay
t/spawn..........ok 44/56couldn't create "ls": Permission denied
t/spawn..........FAILED tests 45-56
        Failed 12/56 tests, 78.57% okay
t/startup........ok 18/26couldn't open log: No such file or directory
t/startup........FAILED tests 10-16, 19-26
        Failed 15/26 tests, 42.31% okay
t/tagset..........tag4127-1.tag : Permission denied
 at t/tagset.t line 70
        (in cleanup) .tag4127-1.tag : Permission denied
 at t/tagset.t line 0
t/tagset.........dubious
        Test returned status 255 (wstat 65280, 0xff00)
DIED. FAILED tests 7-10
        Failed 4/10 tests, 60.00% okay
Failed Test     Stat Wstat Total Fail  Failed  List of Failed
-------------------------------------------------------------------------------
t/batch-1.t        0    13    21   42 200.00%  1-21
t/batch-2.t        0    13     3    6 200.00%  1-3
t/checkdirs.t    255 65280    42   84 200.00%  1-42
t/checkfiles.t   255 65280    41   82 200.00%  1-41
t/mincutil.t       1   256    22   32 145.45%  7-22
t/searchfiles.t  255 65280    19   38 200.00%  1-19
t/spawn.t                     56   12  21.43%  45-56
t/startup.t                   26   15  57.69%  10-16 19-26
t/tagset.t       255 65280    10    8  80.00%  7-10
Failed 9/14 test scripts, 35.71% okay. 173/381 subtests failed, 54.59% okay.
make: *** [test_dynamic] Error 255