[MINC-users] MINC-users Digest, Vol 4, Issue 9

[Teodor Stanescu]

Hi,
 
Please, could you help me with the following installation-related problem?
 
I was not able to make mritotal to run properly. 
 
I installed (or I tried to install) on my system (Mandriva LE 2005, Intel Xeon) the following packages:
netcdf-3.5.0
minc-1.4
Getopt-Tabular-0.3
mni_perllib-0.07
mni_autoreg-0.98r
mni_autoreg_model-1.03
with path /mni/local/mni. 
 
When I run ./mritotal input.mnc output.xfm I get the following error:
 
Loading configuration file /usr/local/mni/bin/../etc/mni_autoreg/mritotal.cfg
Loading protocol default (protocol file = /usr/local/mni/bin/../etc/mni_autoreg/mritotal.default.cfg)
Couldn't find program "mincresample"
Couldn't find program "mincblur"
Couldn't find program "volume_cog"
Couldn't find program "minctracc"
Couldn't find program "check_scale"
Couldn't find program "autocrop"
 
However, I can access their individual man page, e.g. ./mritotal -help.
 
 
If I run in mni_autoreg-0.98r directory make check I get the following (it couldn't find mincresample):
 
Making check in Proglib
make[1]: Entering directory `/home/teo/t5/mni_autoreg-0.98r/Proglib'
make[1]: Nothing to be done for `check'.
make[1]: Leaving directory `/home/teo/t5/mni_autoreg-0.98r/Proglib'
Making check in make_phantom
make[1]: Entering directory `/home/teo/t5/mni_autoreg-0.98r/make_phantom'
make[1]: Nothing to be done for `check'.
make[1]: Leaving directory `/home/teo/t5/mni_autoreg-0.98r/make_phantom'
Making check in mincbbox
make[1]: Entering directory `/home/teo/t5/mni_autoreg-0.98r/mincbbox'
make[1]: Nothing to be done for `check'.
make[1]: Leaving directory `/home/teo/t5/mni_autoreg-0.98r/mincbbox'
Making check in mincblur
make[1]: Entering directory `/home/teo/t5/mni_autoreg-0.98r/mincblur'
make[1]: Nothing to be done for `check'.
make[1]: Leaving directory `/home/teo/t5/mni_autoreg-0.98r/mincblur'
Making check in mincchamfer
make[1]: Entering directory `/home/teo/t5/mni_autoreg-0.98r/mincchamfer'
make[1]: Nothing to be done for `check'.
make[1]: Leaving directory `/home/teo/t5/mni_autoreg-0.98r/mincchamfer'
Making check in minctracc
make[1]: Entering directory `/home/teo/t5/mni_autoreg-0.98r/minctracc'
Making check in Files
make[2]: Entering directory `/home/teo/t5/mni_autoreg-0.98r/minctracc/Files'
make[2]: Nothing to be done for `check'.
make[2]: Leaving directory `/home/teo/t5/mni_autoreg-0.98r/minctracc/Files'
Making check in Numerical
make[2]: Entering directory `/home/teo/t5/mni_autoreg-0.98r/minctracc/Numerical'
make[2]: Nothing to be done for `check'.
make[2]: Leaving directory `/home/teo/t5/mni_autoreg-0.98r/minctracc/Numerical'
Making check in Optimize
make[2]: Entering directory `/home/teo/t5/mni_autoreg-0.98r/minctracc/Optimize'
make[2]: Nothing to be done for `check'.
make[2]: Leaving directory `/home/teo/t5/mni_autoreg-0.98r/minctracc/Optimize'
Making check in Volume
make[2]: Entering directory `/home/teo/t5/mni_autoreg-0.98r/minctracc/Volume'
make[2]: Nothing to be done for `check'.
make[2]: Leaving directory `/home/teo/t5/mni_autoreg-0.98r/minctracc/Volume'
Making check in Main
make[2]: Entering directory `/home/teo/t5/mni_autoreg-0.98r/minctracc/Main'
make[2]: Nothing to be done for `check'.
make[2]: Leaving directory `/home/teo/t5/mni_autoreg-0.98r/minctracc/Main'
Making check in Extra_progs
make[2]: Entering directory `/home/teo/t5/mni_autoreg-0.98r/minctracc/Extra_progs'
make  cmpxfm
make[3]: Entering directory `/home/teo/t5/mni_autoreg-0.98r/minctracc/Extra_progs'
make[3]: `cmpxfm' is up to date.
make[3]: Leaving directory `/home/teo/t5/mni_autoreg-0.98r/minctracc/Extra_progs'
make  check-TESTS
make[3]: Entering directory `/home/teo/t5/mni_autoreg-0.98r/minctracc/Extra_progs'
PASS: param2xfm.tests
==================
All 1 tests passed
==================
make[3]: Leaving directory `/home/teo/t5/mni_autoreg-0.98r/minctracc/Extra_progs'
make[2]: Leaving directory `/home/teo/t5/mni_autoreg-0.98r/minctracc/Extra_progs'
make[2]: Entering directory `/home/teo/t5/mni_autoreg-0.98r/minctracc'
make[2]: Nothing to be done for `check-am'.
make[2]: Leaving directory `/home/teo/t5/mni_autoreg-0.98r/minctracc'
make[1]: Leaving directory `/home/teo/t5/mni_autoreg-0.98r/minctracc'
Making check in perl
make[1]: Entering directory `/home/teo/t5/mni_autoreg-0.98r/perl'
make[1]: Nothing to be done for `check'.
make[1]: Leaving directory `/home/teo/t5/mni_autoreg-0.98r/perl'
Making check in Testing
make[1]: Entering directory `/home/teo/t5/mni_autoreg-0.98r/Testing'
make  ellipse0.mnc      ellipse1.mnc    ellipse2.mnc    ellipse3.mnc    ellipse4.mnc    warped_ellipse4.mnc ellipse0_dxyz.mnc        ellipse1_dxyz.mnc       ellipse2_dxyz.mnc       ellipse3_dxyz.mnc       ellipse4_dxyz.mnc    warped_ellipse4_dxyz.mnc        ellipse0_slice_x.mnc    ellipse0_slice_y.mnc    ellipse0_slice_z.mnc test1.xfm       test2.xfm       test3.xfm 
make[2]: Entering directory `/home/teo/t5/mni_autoreg-0.98r/Testing'
make[2]: `ellipse0.mnc' is up to date.
make[2]: `ellipse1.mnc' is up to date.
mincresample -clobber -transformation test2.xfm \
-like ellipse0.mnc ellipse0.mnc ellipse2.mnc
make[2]: mincresample: Command not found
make[2]: *** [ellipse2.mnc] Error 127
make[2]: Leaving directory `/home/teo/t5/mni_autoreg-0.98r/Testing'
make[1]: *** [check-am] Error 2
make[1]: Leaving directory `/home/teo/t5/mni_autoreg-0.98r/Testing'
make: *** [check-recursive] Error 1

 
Also, in mni_autoreg_model-1.03 the make install step failed with the following message:
 
gunzip: average_305_headmask.mnc already exists; do you wish to overwrite (y or n)? y
gunzip: average_305_mask.mnc already exists; do you wish to overwrite (y or n)? y
gunzip: average_305.mnc already exists; do you wish to overwrite (y or n)? y
/bin/sh: make_model: command not found
make: *** [install] Error 127

 
Thank you for your help in advance.
 
Best regards,
 
Teo


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