[MINC-users] batch error

[Sylvain MILOT]

Hello Atsuko,

I don't see how it could work either way since your path points to
/usr/local/mni/bin/mritotal, in which case the following should work:

/usr/local/mni/bin/mritotal -model icbm_avg_152_t1_tal_lin ...

The error reported is not consistent with the command you provided though!

I may be just guessing here but be aware that

do_mritotal -model

and

mritotal -model

don't have the same meaning!

Sylvain


On Wed, 14 Dec 2005, nagano atsuko wrote:

> Hello all,
>
> When I try batch for "mritotal -model icbm_avg_t1_tal_lin abc.mnc abc.xfm",
> it fails.
> If I use the command directly, it works.
>
> The error command is as below;
> ncopen: filename "icbm_avg_152_t1_tal_lin.mnc": No such file or directory
> miopen: MINC package entry point
>
> Please let me know a good solution.
>
> Atsuko
>
> P.S.
>
> I still have problem for register-install.
> Maybe I had better ask somebody directy.
>
>
> Job 283793.shadow (STDIN) in the  queue on bullcalf failed.
> Job started Tue Dec 13 21:25:44; finished: Tue Dec 13 21:25:44
> Elapsed time: 0 s
> CPU     time: 0.05 s
> Output follows:
>
> nccreate: filename "NH3.mnc": netCDF file exists && NC_NOCLOBBER
> micreate: MINC package entry point
>
>
>
>
>
> >From: Robert VINCENT <bert at bic.mni.mcgill.ca>
> >Reply-To: MINC users mailing list <minc-users at bic.mni.mcgill.ca>
> >To: MINC users mailing list <minc-users at bic.mni.mcgill.ca>
> >Subject: Re: [MINC-users] glut
> >Date: Tue, 13 Dec 2005 12:21:01 -0500
> >
> >Hi Atsuko,
> >
> >If you need it, I've placed a copy of the glut32.dll I use on my Windows
> >XP system in my directory:
> >
> >~bert/tmp/glut32.dll
> >
> >This should work with the precompiled versions of Register and Display
> >from packages.bic.mni.mcgill.ca
> >
> >	-bert
> >
> >On Tue, 13 Dec 2005, Andrew Janke wrote:
> >
> > > You may find it easier to download the precompiled register and
> > > Display binaries for cygwin from here:
> > >
> > >     packages.bic.mni.mcgill.ca/cygwin
> > >
> > > if it is a runtime error then do a google for glut32.dll and put the
> > > resulting file in your wondows/system directory or some such place.
> > > or course it would be best to get your glut dll from a somewhat
> > > official site if you don't like viruses.
> > >
> > > a
> > >
> > > On 13/12/05, Atsuko Nagano-Saito <atsuko at bic.mni.mcgill.ca> wrote:
> > > > Hello all,
> > > >
> > > > I am now trying to install register on cygwin, but before this "glut"
> seems to be needed.
> > > > Where can I get glut NOW? Please help me.
> > > >
> > > > Thank you in advance,
> > > >
> > > > Atsuko
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > >
> > > > _______________________________________________
> > > > MINC-users at bic.mni.mcgill.ca
> > > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > > >
> > >
> > >
> > > --
> > > Andrew Janke      (a.janke at gmail.com || www.cmr.uq.edu.au/~rotor)
> > > Canada->Montreal                                   Cell: +1 (514) 924
> 2012
> > >
> > > _______________________________________________
> > > MINC-users at bic.mni.mcgill.ca
> > > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> > >
> >
> >_______________________________________________
> >MINC-users at bic.mni.mcgill.ca
> >http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>
> _________________________________________________________________
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> _______________________________________________
> MINC-users at bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>

---
Sylvain Milot (sylvain at bic.mni.mcgill.ca)
              (trinity at bic.mni.mcgill.ca)
Brain Imaging Centre
Montreal Neurological Institute
Webster 2B, Room 208
Montreal, Qc., Canada, H3A 2B4
Phone  : (514) 398-4965, Fax: 398-8948
Mobile : (514) 712-1768
Office : 527 Av Des Pins O., Room 204
         Montreal, Qc., H2W 1S4