[MINC-users] labeling

[D. Louis Collins]

Daniel,

You have it exactly - this step customizes a standard set of labels
(phantom_labels.mnc) to your subject.

The script stx_segment uses this as a basic step, but combines the result
with classsification results and heuristic rules to minimize errors.

-Louis


On 11/23/04 10:49 AM, "Daniel Schwarz" <schwarzd@feec.vutbr.cz> wrote:

> Dear minc-users,
> 
> I would like to ask one thing, just tu make sure I don't do nonsense.
> Is this labeling?
> 
> mincresample -nearest_neighbour -invert_transform -transform
> nonlinear.xfm -like image.mnc phantom_labels.mnc labeled_image.mnc
> 
> where:
> 
> - image.mnc is the image I want to segment/label.
> 
> - nonlinear.xfm is file containing the affine transform and the name of
> the file with displacement field. I have got it with MRITOTAL and
> MRITOTAL -nonlinear, where the model was phantom_template.
> 
> - phantom_labels.mnc is segmented phantom_template.mnc
> 
> - labeled_image.mnc is the expected segmented/labeled image.mnc
> 
> 
> Thanks a lot for your answers/corrections/notices.
> 
> Daniel Schwarz
> 
> 
> 
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