[MINC-users] Minc to analyze methods

[Dylan WAGNER]

On Wed, 14 Jul 2004, Andrew Janke wrote:

>
> I can really only comment on mnc2a>
> I have found that various analyze reading programs expect analyze files to be in
> a standard orientation.  Perhaps try this:
>
>    mincreshape -dimorder time,zspace,yspace,xspace in.mnc out.mnc
>
> before converting to analyze.  (ie: the "standard" dimension ordering expected
> by analyze.


 Many thanks for the mincreshape tip. It did the trick. Still have to
flip top/bottom in mricrow, but that's no big deal. I'll read up on
mincreshape and see if I can flip them beforehand so as to avoid having to
use mricro.


    One final question for people on BIC at the mni, how are you using
ana2mnc? I've still not found make_links to generate the mnc2ana symbolic
link. Or is mnc2ana already there for everyon but stored outside my path?


                Best,