[MINC-users] make build problem with mni_n3

[Jason Lerch]

On Jan 14, 2004, at 11:56 AM, Asim Khan wrote:

> Hi Andre,
>
> I have version 1.05 of N3 and the following are installed :
>
> mni_perllib-0.05 the Perl -v is  5.005_03 on solaris 2.8
> netcdf-3.5.0 binaries for solaris 2.8 from unidata
> minc-1.2 installed in /usr/local/mni
>
> the 'Building and installating N3 from source code' page from URL:
> http://www.bic.mni.mcgill.ca/software/N3/node5.html
> does not mention  "EBTKS", "BLAS" or "LAPACK" ..?

That page is unfortunately out of date. If you check the readme file 
that comes with the N3 package (which you should obtain from 
http://www.bic.mni.mcgill.ca/software/distribution) it should mention 
all the required packages and where to get them.

Cheers,

Jason


>
>
> Andre MATOS wrote:
>> Hi Asim,
>> which version of N3 you are using? If I am not wrong, to install N3 
>> you need first to install "netCDF", "minc", "EBTKS", "BLAS" or 
>> "LAPACK" and "Perl5". Also, in which system are you installing the 
>> N3?
>> Andre Matos
>> amatos@mrs.mni.mcgill.ca
>> On Wed, 14 Jan 2004, Asim Khan wrote:
>>> Dear mni_n3 support,
>>>
>>> I have a make build problem:
>>>
>>>  env NETCDF_INCLUDE=/usr/local/netcdf-3.5.0/include/ 
>>> MINC_INCLUDE=/usr/local/mni/include MINC_LIB=/usr/local/mni/lib 
>>> VOLUMEIO_INCLUDE=/usr/local/mni/include 
>>> VOLUMEIO_LIB=/usr/local/mni/lib MNI_DATAPATH=/usr/local/mni/data 
>>> ./configure --prefix=/usr/local/n3
>>>
>>> and get this error at the end :
>>>
>>> make[3]: *** [volumeStats.o] Error 1
>>> make[3]: Leaving directory `/space/N3/src/VolumeStats'
>>> umask 022;
>>> make[2]: Leaving directory `/space/N3/src'
>>> make[1]: Leaving directory `/space/N3/src'
>>>
>>> and
>>>
>>> even make test fails,eg
>>> MNI_DATAPATH=/usr/local/mni/data with all the files,ie
>>>
>>>
>>>  ls -l /usr/local/mni/data/N3
>>> total 126
>>> -rw-r--r--   1 root     other      64270 Jan  8 15:30 
>>> average_305_mask_1mm.mnc.gz
>>>  ls -l /usr/local/mni/data/testing/
>>> total 126
>>> -rw-r--r--   1 root     other      64270 Jan  8 16:22 
>>> average_305_mask_1mm.mnc.gz
>>>
>>> make test
>>> (cd testing; ./do_test test.log )
>>>
>>> ---------------------------------------------------------------------
>>>  Testing MNI N3 software package
>>>
>>> ---------------------------------------------------------------------
>>>
>>> do_test: couldn't find program "field2imp"
>>> do_test: couldn't find program "imp2field"
>>> do_test: couldn't find program "sharpen_volume"
>>> do_test: couldn't find program "nu_estimate_np_and_em"
>>> do_test: couldn't find program "nu_evaluate"
>>> do_test: couldn't find program "nu_evaluate"
>>> do_test: couldn't find program "nu_estimate"
>>> do_test: couldn't find program "evaluate_field"
>>> do_test: couldn't find program "extracttag"
>>> do_test: couldn't find program "sharpen_hist"
>>> do_test: couldn't find program "spline_smooth"
>>> do_test: couldn't find program "volume_hist"
>>> do_test: couldn't find program "volume_stats"
>>> Cannot find the file N3/testing/average_305_mask_1mm.mnc.gz.  The 
>>> data for the test suite
>>> does not appear to be installed correctly.
>>> make: *** [test] Error 1
>>>
>>>
>>> ..help would be much appreciated ..!
>>>
>
>
> -- 
> ------------------------------------
> Asim Khan
> Unix Systems Administrator
> St George's Hospital Medical School
> www.sghms.ac.uk
> ------------------------------------
>
>
>
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