[MINC-users] make build problem with mni_n3

[Asim Khan]

Hi Andre,

I have version 1.05 of N3 and the following are installed :

mni_perllib-0.05 the Perl -v is  5.005_03 on solaris 2.8
netcdf-3.5.0 binaries for solaris 2.8 from unidata
minc-1.2 installed in /usr/local/mni

the 'Building and installating N3 from source code' page from URL:
http://www.bic.mni.mcgill.ca/software/N3/node5.html
does not mention  "EBTKS", "BLAS" or "LAPACK" ..?


Andre MATOS wrote:
> Hi Asim,
> 
> which version of N3 you are using? If I am not wrong, to install N3 you 
> need first to install "netCDF", "minc", "EBTKS", "BLAS" or "LAPACK" and 
> "Perl5". Also, in which system are you installing the N3?
> 
> Andre Matos
> amatos@mrs.mni.mcgill.ca
> 
> 
> On Wed, 14 Jan 2004, Asim Khan wrote:
> 
> 
>>Dear mni_n3 support,
>>
>>I have a make build problem:
>>
>>  env NETCDF_INCLUDE=/usr/local/netcdf-3.5.0/include/ 
>>MINC_INCLUDE=/usr/local/mni/include MINC_LIB=/usr/local/mni/lib 
>>VOLUMEIO_INCLUDE=/usr/local/mni/include VOLUMEIO_LIB=/usr/local/mni/lib 
>>MNI_DATAPATH=/usr/local/mni/data ./configure --prefix=/usr/local/n3
>>
>>and get this error at the end :
>>
>>make[3]: *** [volumeStats.o] Error 1
>>make[3]: Leaving directory `/space/N3/src/VolumeStats'
>>umask 022;
>>make[2]: Leaving directory `/space/N3/src'
>>make[1]: Leaving directory `/space/N3/src'
>>
>>and
>>
>>even make test fails,eg
>>MNI_DATAPATH=/usr/local/mni/data with all the files,ie
>>
>>
>>  ls -l /usr/local/mni/data/N3
>>total 126
>>-rw-r--r--   1 root     other      64270 Jan  8 15:30 
>>average_305_mask_1mm.mnc.gz
>>  ls -l /usr/local/mni/data/testing/
>>total 126
>>-rw-r--r--   1 root     other      64270 Jan  8 16:22 
>>average_305_mask_1mm.mnc.gz
>>
>>make test
>>(cd testing; ./do_test test.log )
>>
>>---------------------------------------------------------------------
>>  Testing MNI N3 software package
>>
>>---------------------------------------------------------------------
>>
>>do_test: couldn't find program "field2imp"
>>do_test: couldn't find program "imp2field"
>>do_test: couldn't find program "sharpen_volume"
>>do_test: couldn't find program "nu_estimate_np_and_em"
>>do_test: couldn't find program "nu_evaluate"
>>do_test: couldn't find program "nu_evaluate"
>>do_test: couldn't find program "nu_estimate"
>>do_test: couldn't find program "evaluate_field"
>>do_test: couldn't find program "extracttag"
>>do_test: couldn't find program "sharpen_hist"
>>do_test: couldn't find program "spline_smooth"
>>do_test: couldn't find program "volume_hist"
>>do_test: couldn't find program "volume_stats"
>>Cannot find the file N3/testing/average_305_mask_1mm.mnc.gz.  The data 
>>for the test suite
>>does not appear to be installed correctly.
>>make: *** [test] Error 1
>>
>>
>>..help would be much appreciated ..!
>>
> 
> 


-- 
------------------------------------
Asim Khan
Unix Systems Administrator
St George's Hospital Medical School
www.sghms.ac.uk
------------------------------------



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