[MINC-users] make build problem with mni_n3

[Asim Khan]

Okay and thanks

..I'll try and install using the following page:

http://www.bic.mni.mcgill.ca/software/distribution

and install the extra packages..

Jason Lerch wrote:
> 
> On Jan 14, 2004, at 11:56 AM, Asim Khan wrote:
> 
>> Hi Andre,
>>
>> I have version 1.05 of N3 and the following are installed :
>>
>> mni_perllib-0.05 the Perl -v is  5.005_03 on solaris 2.8
>> netcdf-3.5.0 binaries for solaris 2.8 from unidata
>> minc-1.2 installed in /usr/local/mni
>>
>> the 'Building and installating N3 from source code' page from URL:
>> http://www.bic.mni.mcgill.ca/software/N3/node5.html
>> does not mention  "EBTKS", "BLAS" or "LAPACK" ..?
> 
> 
> That page is unfortunately out of date. If you check the readme file 
> that comes with the N3 package (which you should obtain from 
> http://www.bic.mni.mcgill.ca/software/distribution) it should mention 
> all the required packages and where to get them.
> 
> Cheers,
> 
> Jason
> 
> 
>>
>>
>> Andre MATOS wrote:
>>
>>> Hi Asim,
>>> which version of N3 you are using? If I am not wrong, to install N3 
>>> you need first to install "netCDF", "minc", "EBTKS", "BLAS" or 
>>> "LAPACK" and "Perl5". Also, in which system are you installing the N3?
>>> Andre Matos
>>> amatos@mrs.mni.mcgill.ca
>>> On Wed, 14 Jan 2004, Asim Khan wrote:
>>>
>>>> Dear mni_n3 support,
>>>>
>>>> I have a make build problem:
>>>>
>>>>  env NETCDF_INCLUDE=/usr/local/netcdf-3.5.0/include/ 
>>>> MINC_INCLUDE=/usr/local/mni/include MINC_LIB=/usr/local/mni/lib 
>>>> VOLUMEIO_INCLUDE=/usr/local/mni/include 
>>>> VOLUMEIO_LIB=/usr/local/mni/lib MNI_DATAPATH=/usr/local/mni/data 
>>>> ./configure --prefix=/usr/local/n3
>>>>
>>>> and get this error at the end :
>>>>
>>>> make[3]: *** [volumeStats.o] Error 1
>>>> make[3]: Leaving directory `/space/N3/src/VolumeStats'
>>>> umask 022;
>>>> make[2]: Leaving directory `/space/N3/src'
>>>> make[1]: Leaving directory `/space/N3/src'
>>>>
>>>> and
>>>>
>>>> even make test fails,eg
>>>> MNI_DATAPATH=/usr/local/mni/data with all the files,ie
>>>>
>>>>
>>>>  ls -l /usr/local/mni/data/N3
>>>> total 126
>>>> -rw-r--r--   1 root     other      64270 Jan  8 15:30 
>>>> average_305_mask_1mm.mnc.gz
>>>>  ls -l /usr/local/mni/data/testing/
>>>> total 126
>>>> -rw-r--r--   1 root     other      64270 Jan  8 16:22 
>>>> average_305_mask_1mm.mnc.gz
>>>>
>>>> make test
>>>> (cd testing; ./do_test test.log )
>>>>
>>>> ---------------------------------------------------------------------
>>>>  Testing MNI N3 software package
>>>>
>>>> ---------------------------------------------------------------------
>>>>
>>>> do_test: couldn't find program "field2imp"
>>>> do_test: couldn't find program "imp2field"
>>>> do_test: couldn't find program "sharpen_volume"
>>>> do_test: couldn't find program "nu_estimate_np_and_em"
>>>> do_test: couldn't find program "nu_evaluate"
>>>> do_test: couldn't find program "nu_evaluate"
>>>> do_test: couldn't find program "nu_estimate"
>>>> do_test: couldn't find program "evaluate_field"
>>>> do_test: couldn't find program "extracttag"
>>>> do_test: couldn't find program "sharpen_hist"
>>>> do_test: couldn't find program "spline_smooth"
>>>> do_test: couldn't find program "volume_hist"
>>>> do_test: couldn't find program "volume_stats"
>>>> Cannot find the file N3/testing/average_305_mask_1mm.mnc.gz.  The 
>>>> data for the test suite
>>>> does not appear to be installed correctly.
>>>> make: *** [test] Error 1
>>>>
>>>>
>>>> ..help would be much appreciated ..!
>>>>
>>
>>
>> -- 
>> ------------------------------------
>> Asim Khan
>> Unix Systems Administrator
>> St George's Hospital Medical School
>> www.sghms.ac.uk
>> ------------------------------------
>>
>>
>>
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> 
> 
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-- 
------------------------------------
Asim Khan
Unix Systems Administrator
St George's Hospital Medical School
www.sghms.ac.uk
------------------------------------



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