[MINC-users] New OS X binaries released
Jon Erik Ween
minc-users@bic.mni.mcgill.ca
Mon, 2 Feb 2004 12:34:19 -0800
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OOPS, sorry, but even with environment set:
[enoch:MiamiICH/results/545] jween% echo $DYLD_LIBRARY_PATH
/usr/local/mni/external-libs
Got errors trying to run [enoch:MiamiICH/results/545] jween%
nu_correct_norm 545_1594.mnc 545_1594.nl.mnc
dyld: /usr/local/mni/bin/inormalize Undefined symbols:
/usr/local/mni/bin/inormalize undefined reference to _wcslen expected
to be defined in /usr/lib/libSystem.B.dylib
/usr/local/mni/bin/inormalize undefined reference to _wmemcpy expected
to be defined in /usr/lib/libSystem.B.dylib
/usr/local/mni/bin/inormalize undefined reference to _wmemmove expected
to be defined in /usr/lib/libSystem.B.dylib
/usr/local/mni/bin/inormalize undefined reference to _wmemchr expected
to be defined in /usr/lib/libSystem.B.dylib
/usr/local/mni/bin/inormalize undefined reference to _wmemcmp expected
to be defined in /usr/lib/libSystem.B.dylib
/usr/local/mni/bin/inormalize undefined reference to _wmemset expected
to be defined in /usr/lib/libSystem.B.dylib
/usr/local/mni/bin/inormalize undefined reference to _wcsftime expected
to be defined in /usr/lib/libSystem.B.dylib
/usr/local/mni/bin/inormalize undefined reference to _btowc expected to
be defined in /usr/lib/libSystem.B.dylib
/usr/local/mni/bin/inormanormalize_mri: crashed while running
inormalize (termination status=5)
nu_correct_norm: crashed while running normalize_mri (termination
status=65280)
[enoch:MiamiICH/results/545] jween% ls -l /usr/local/mni/external-libs/
Is this a 10.2 vs 10.3 thing?
Jon
On Thursday, January 29, 2004, at 01:37 PM, Jason Lerch wrote:
> You still have to set your environment like so:
>
> setenv DYLD_LIBRARY_PATH /usr/local/mni/external-libs
>
> Let me know if you have the same problem even with that variable set
> and I'll look into it.
>
> Thanks!
>
> Jason
>
> On Jan 29, 2004, at 4:28 PM, Jon Erik Ween wrote:
>
>> Installing the new minc binaries under Jaguar (10.2.8) with the
>> gcc3.3 compiler completed without error. Trying to run the binaries
>> resulted in the following errors:
>>
>> [enoch:~] jween% Display
>> dyld: Display can't open library: /sw/lib/libglut.3.dylib (No such
>> file or directory, errno = 2)
>> Trace/BPT trap
>> [enoch:~] jween% register
>> dyld: register can't open library: /sw/lib/libglut.3.dylib (No such
>> file or directory, errno = 2)
>> Trace/BPT trap
>>
>>
>> Hopes this helps. I'll continue to use the old versions, which work
>> fine.
>>
>> Jon
>>
>> Jon Erik Ween, MD, MS
>> Assistant Professor
>> Cognitive and Cerebrovascular Neurology
>> Director, Stroke Program
>> Loma Linda University
>>
>> <ADIlogoFinalSmall.jpg>
>>
>>
>> On Wednesday, January 28, 2004, at 01:34 PM, Jason Lerch wrote:
>>
>>> Greetings all and apologies for cross-posting,
>>>
>>> I've just uploaded a new release of the OS 10.3 binaries to our
>>> web-site:
>>>
>>> http://www.bic.mni.mcgill.ca/software/distribution/osx.html
>>>
>>> The package should solve most outstanding issues, such as the broken
>>> N3, the lack of support for gzipped files, etc. The Register problem
>>> is still unresolved, though a workaround has been posted.
>>>
>>> The new package contains the following:
>>>
>>> This binary distribution contains the following packages:
>>> NetCDF 3.5.0
>>> MINC 1.3 from CVS
>>> BICPL 1.4.0-1
>>> Register 1.3.4
>>> Display 1.3.8
>>> Conglomerate 1.3 from CVS with some still uncommitted patches
>>> mni_autoreg 0.98k
>>> mni_perllib 0.07
>>> Getopt-Tabular 0.3
>>> mni_autoreg_model 1.03
>>> ray_trace 1.0
>>> EBTKS from CVS with still uncommitted patches
>>> classify from CVS
>>> N3 1.0.6 with ugly compile time hacks
>>> mincmorph 1.1
>>> mincblob 1.1
>>> cortical_surface 1.0 from CVS
>>> ana2mnc from CVS
>>>
>>> Please let me know of any issues that might arise. The ReadMe file
>>> should contain all the instructions necessary for using this
>>> distribution.
>>>
>>> Cheers,
>>>
>>> Jason
>>>
>>> _______________________________________________
>>> MINC-users@bic.mni.mcgill.ca
>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>>
>>>
>>
>
> _______________________________________________
> MINC-users@bic.mni.mcgill.ca
> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>
>
Jon Erik Ween, MD, MS
Assistant Professor
Cognitive and Cerebrovascular Neurology
Director, Stroke Program
Loma Linda University
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