[MINC-users] New OS X binaries released

[Jason Lerch]

This might indeed be a 10.2/10.3 difference. Can anyone else confirm 
whether inormalize works for them and let me know what version of OS X 
they are using? It works just fine on my 10.3 machine.

Thanks!

Jason

On Feb 2, 2004, at 3:34 PM, Jon Erik Ween wrote:

> OOPS, sorry, but even with environment set:
>
> [enoch:MiamiICH/results/545] jween% echo $DYLD_LIBRARY_PATH
> /usr/local/mni/external-libs
>
> Got errors trying to run [enoch:MiamiICH/results/545] jween% 
> nu_correct_norm 545_1594.mnc 545_1594.nl.mnc
>
> dyld: /usr/local/mni/bin/inormalize Undefined symbols:
> /usr/local/mni/bin/inormalize undefined reference to _wcslen expected 
> to be defined in /usr/lib/libSystem.B.dylib
> /usr/local/mni/bin/inormalize undefined reference to _wmemcpy expected 
> to be defined in /usr/lib/libSystem.B.dylib
> /usr/local/mni/bin/inormalize undefined reference to _wmemmove 
> expected to be defined in /usr/lib/libSystem.B.dylib
> /usr/local/mni/bin/inormalize undefined reference to _wmemchr expected 
> to be defined in /usr/lib/libSystem.B.dylib
> /usr/local/mni/bin/inormalize undefined reference to _wmemcmp expected 
> to be defined in /usr/lib/libSystem.B.dylib
> /usr/local/mni/bin/inormalize undefined reference to _wmemset expected 
> to be defined in /usr/lib/libSystem.B.dylib
> /usr/local/mni/bin/inormalize undefined reference to _wcsftime 
> expected to be defined in /usr/lib/libSystem.B.dylib
> /usr/local/mni/bin/inormalize undefined reference to _btowc expected 
> to be defined in /usr/lib/libSystem.B.dylib
> /usr/local/mni/bin/inormanormalize_mri: crashed while running 
> inormalize (termination status=5)
> nu_correct_norm: crashed while running normalize_mri (termination 
> status=65280)
> [enoch:MiamiICH/results/545] jween% ls -l /usr/local/mni/external-libs/
>
> Is this a 10.2 vs 10.3 thing?
>
> Jon
>
> On Thursday, January 29, 2004, at 01:37 PM, Jason Lerch wrote:
>
>> You still have to set your environment like so:
>>
>> setenv DYLD_LIBRARY_PATH /usr/local/mni/external-libs
>>
>> Let me know if you have the same problem even with that variable set 
>> and I'll look into it.
>>
>> Thanks!
>>
>> Jason
>>
>> On Jan 29, 2004, at 4:28 PM, Jon Erik Ween wrote:
>>
>>> Installing the new minc binaries under Jaguar (10.2.8) with the 
>>> gcc3.3 compiler completed without error. Trying to run the binaries 
>>> resulted in the following errors:
>>>
>>> [enoch:~] jween% Display
>>> dyld: Display can't open library: /sw/lib/libglut.3.dylib  (No such 
>>> file or directory, errno = 2)
>>> Trace/BPT trap
>>> [enoch:~] jween% register
>>> dyld: register can't open library: /sw/lib/libglut.3.dylib  (No such 
>>> file or directory, errno = 2)
>>> Trace/BPT trap
>>>
>>>
>>> Hopes this helps. I'll continue to use the old versions, which work 
>>> fine.
>>>
>>> Jon
>>>
>>> Jon Erik Ween, MD, MS
>>> Assistant Professor
>>> Cognitive and Cerebrovascular Neurology
>>> Director, Stroke Program
>>> Loma Linda University
>>>
>>> <ADIlogoFinalSmall.jpg>
>>>
>>>
>>> On Wednesday, January 28, 2004, at 01:34 PM, Jason Lerch wrote:
>>>
>>>> Greetings all and apologies for cross-posting,
>>>>
>>>> I've just uploaded a new release of the OS 10.3 binaries to our 
>>>> web-site:
>>>>
>>>> http://www.bic.mni.mcgill.ca/software/distribution/osx.html
>>>>
>>>> The package should solve most outstanding issues, such as the 
>>>> broken N3, the lack of support for gzipped files, etc. The Register 
>>>> problem is still unresolved, though a workaround has been posted.
>>>>
>>>> The new package contains the following:
>>>>
>>>> This binary distribution contains the following packages:
>>>> NetCDF		3.5.0
>>>> MINC			1.3 from CVS
>>>> BICPL			1.4.0-1
>>>> Register		1.3.4
>>>> Display		1.3.8
>>>> Conglomerate	1.3 from CVS with some still uncommitted patches
>>>> mni_autoreg		0.98k
>>>> mni_perllib		0.07
>>>> Getopt-Tabular	0.3
>>>> mni_autoreg_model 1.03
>>>> ray_trace		1.0
>>>> EBTKS		from CVS with still uncommitted patches
>>>> classify		from CVS
>>>> N3			1.0.6 with ugly compile time hacks
>>>> mincmorph		1.1
>>>> mincblob		1.1
>>>> cortical_surface	1.0 from CVS
>>>> ana2mnc		from CVS
>>>>
>>>> Please let me know of any issues that might arise. The ReadMe file 
>>>> should contain all the instructions necessary for using this 
>>>> distribution.
>>>>
>>>> Cheers,
>>>>
>>>> Jason
>>>>
>>>> _______________________________________________
>>>> MINC-users@bic.mni.mcgill.ca
>>>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>>>
>>>>
>>>
>>
>> _______________________________________________
>> MINC-users@bic.mni.mcgill.ca
>> http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
>>
>>
> Jon Erik Ween, MD, MS
> Assistant Professor
> Cognitive and Cerebrovascular Neurology
> Director, Stroke Program
> Loma Linda University
>
> <ADIlogoFinalSmall.jpg>