[MINC-development] nu_correct & auto_mask

[Richard Boyes]

Thanks John,

Richard

On Fri, 15 Apr 2005 16:38:47 -0400, John G. Sled <jgsled@sickkids.ca>  
wrote:

>
>
> Dear Richard,
>
> N3 checks the xspace:spacetype variable for the word 'talairach'.
> Using mincresample with the -talairach option should make
> this work.
>
> with regards,
>
> John
>
> On Wed, Apr 13, 2005 at 05:42:08PM +0100, Richard Boyes wrote:
>> Hello everybody,
>>
>> I am interested in using the -auto_mask feature of N3 but I am
>> unsure how to put my scan into the same space as the average_305
>> scan so that N3 can pick up the fact that its in the same space
>> as the average_305_mask_1mm.mnc.gz mask.
>>
>> I have registered my scan to the average_305.mnc to give me
>> my_scan_r305, but am not sure how to give it to N3 for
>> processing so that the -auto_mask gets picked up.
>>
>> Do I have to go mincresample -talairach or something ??
>>
>> Thanks for any help
>> Richard
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