[MINC-development] nu_correct & auto_mask

John G. Sled minc-development@bic.mni.mcgill.ca
Fri, 15 Apr 2005 16:38:47 -0400


Dear Richard,

N3 checks the xspace:spacetype variable for the word 'talairach'.
Using mincresample with the -talairach option should make
this work.

with regards,

John

On Wed, Apr 13, 2005 at 05:42:08PM +0100, Richard Boyes wrote:
> Hello everybody,
> 
> I am interested in using the -auto_mask feature of N3 but I am
> unsure how to put my scan into the same space as the average_305
> scan so that N3 can pick up the fact that its in the same space
> as the average_305_mask_1mm.mnc.gz mask.
> 
> I have registered my scan to the average_305.mnc to give me
> my_scan_r305, but am not sure how to give it to N3 for
> processing so that the -auto_mask gets picked up.
> 
> Do I have to go mincresample -talairach or something ??
> 
> Thanks for any help
> Richard
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