[MINC-development] dcm2mnc issues

[Vladimir S. FONOV]

Unfortunately, proposed changes do not seem to address the problem.
See https://github.com/BIC-MNI/minc-tools/pull/113

On Fri, May 7, 2021 at 1:35 PM Cecile Madjar <cecile.madjar at mcin.ca> wrote:

> Hi Vlad,
>
> Definitely, I will copy sample datasets and let you know where they are
> once copied. Thank you!!
>
> Cécile
>
> > On May 7, 2021, at 10:36 AM, Vladimir S. Fonov <vladimir.fonov at gmail.com>
> wrote:
> >
> > Hello,
> >
> >
> > so the proposed change to the minc-tools is on github (
> https://github.com/BIC-MNI/minc-tools/pull/113 ), but there is no DICOM
> files to actually test that it works.
> >
> > So, as an interested party, perhaps Cecile Madjar can supply a set of
> DICOMs that can be used for testing?
> >
> >
> > On 2021-04-30 10:02 a.m., Cecile Madjar wrote:
> >> Hi JP,
> >> This is great news! Thank you. Let me know once it is part of the MINC
> tools.
> >> Is there a way to obtain the dcm2mnc binaries for Ubuntu and CentOS at
> the same time by any chance?
> >> Thank you again,
> >> Cécile
> >> On Thu, Apr 29, 2021 at 1:05 PM Jean-Philippe Coutu <jp at biospective.com
> <mailto:jp at biospective.com>> wrote:
> >>    Hi Cecile,
> >>    We have been modifying dcm2mnc actively internally over the past
> >>    four years without having the bandwidth to generate pull requests to
> >>    the minctools github repository. I am preparing a (sizeable) pull
> >>    request to the minctools github repository that includes all of our
> >>    changes, which I believe from my experience is likely to fix at
> >>    least two of the three issues you have opened.
> >>    Best,
> >>    JP
> >>        From: *Cecile Madjar* <cecile.madjar at mcin.ca
> >>        <mailto:cecile.madjar at mcin.ca>>
> >>        Date: Fri, Apr 23, 2021 at 5:22 PM
> >>        Subject: [MINC-development] dcm2mnc issues
> >>        To: MINC development discussion & planning
> >>        <minc-development at bic.mni.mcgill.ca
> >>        <mailto:minc-development at bic.mni.mcgill.ca>>,
> >>        <minc-users at bic.mni.mcgill.ca <mailto:
> minc-users at bic.mni.mcgill.ca>>
> >>        Hello,
> >>        A while back, we logged several critical dcm2mnc issues on
> >>        GitHub. We are still experiencing those issues in several of our
> >>        LORIS projects. I wanted to follow up with the MINC community
> >>        regarding those issues to see if dcm2mnc is still supported and
> >>        if there will be any developments regarding those issues.
> >>        Here is the list of logged issues:
> >>        https://github.com/BIC-MNI/minc-tools/issues/created_by/cmadjar
> >>        <https://github.com/BIC-MNI/minc-tools/issues/created_by/cmadjar
> >
> >>        As the imaging world progresses, we are encountering those
> >>        problematic issues in more of our LORIS projects and we need to
> >>        provide our users solutions regarding these issues. If there is
> >>        no possibility to fix dcm2mnc, then we may have to consider
> >>        moving away from MINC, which we would prefer avoiding for
> >>        obvious reasons.
> >>        Please, let us know your thoughts on this. Help regarding these
> >>        issues would be greatly appreciated.
> >>        Best regards,
> >>        Cécile
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> >>
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-- 
Best regards,

 Vladimir S. Fonov ~ vladimir <dot> fonov <at> gmail <dot> com
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