<div dir="ltr">Unfortunately, proposed changes do not seem to address the problem. <div>See <a href="https://github.com/BIC-MNI/minc-tools/pull/113">https://github.com/BIC-MNI/minc-tools/pull/113</a></div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Fri, May 7, 2021 at 1:35 PM Cecile Madjar <<a href="mailto:cecile.madjar@mcin.ca">cecile.madjar@mcin.ca</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">Hi Vlad,<br>
<br>
Definitely, I will copy sample datasets and let you know where they are once copied. Thank you!!<br>
<br>
Cécile<br>
<br>
> On May 7, 2021, at 10:36 AM, Vladimir S. Fonov <<a href="mailto:vladimir.fonov@gmail.com" target="_blank">vladimir.fonov@gmail.com</a>> wrote:<br>
> <br>
> Hello,<br>
> <br>
> <br>
> so the proposed change to the minc-tools is on github ( <a href="https://github.com/BIC-MNI/minc-tools/pull/113" rel="noreferrer" target="_blank">https://github.com/BIC-MNI/minc-tools/pull/113</a> ), but there is no DICOM files to actually test that it works.<br>
> <br>
> So, as an interested party, perhaps Cecile Madjar can supply a set of DICOMs that can be used for testing?<br>
> <br>
> <br>
> On 2021-04-30 10:02 a.m., Cecile Madjar wrote:<br>
>> Hi JP,<br>
>> This is great news! Thank you. Let me know once it is part of the MINC tools.<br>
>> Is there a way to obtain the dcm2mnc binaries for Ubuntu and CentOS at the same time by any chance?<br>
>> Thank you again,<br>
>> Cécile<br>
>> On Thu, Apr 29, 2021 at 1:05 PM Jean-Philippe Coutu <<a href="mailto:jp@biospective.com" target="_blank">jp@biospective.com</a> <mailto:<a href="mailto:jp@biospective.com" target="_blank">jp@biospective.com</a>>> wrote:<br>
>> Hi Cecile,<br>
>> We have been modifying dcm2mnc actively internally over the past<br>
>> four years without having the bandwidth to generate pull requests to<br>
>> the minctools github repository. I am preparing a (sizeable) pull<br>
>> request to the minctools github repository that includes all of our<br>
>> changes, which I believe from my experience is likely to fix at<br>
>> least two of the three issues you have opened.<br>
>> Best,<br>
>> JP<br>
>> From: *Cecile Madjar* <<a href="mailto:cecile.madjar@mcin.ca" target="_blank">cecile.madjar@mcin.ca</a><br>
>> <mailto:<a href="mailto:cecile.madjar@mcin.ca" target="_blank">cecile.madjar@mcin.ca</a>>><br>
>> Date: Fri, Apr 23, 2021 at 5:22 PM<br>
>> Subject: [MINC-development] dcm2mnc issues<br>
>> To: MINC development discussion & planning<br>
>> <<a href="mailto:minc-development@bic.mni.mcgill.ca" target="_blank">minc-development@bic.mni.mcgill.ca</a><br>
>> <mailto:<a href="mailto:minc-development@bic.mni.mcgill.ca" target="_blank">minc-development@bic.mni.mcgill.ca</a>>>,<br>
>> <<a href="mailto:minc-users@bic.mni.mcgill.ca" target="_blank">minc-users@bic.mni.mcgill.ca</a> <mailto:<a href="mailto:minc-users@bic.mni.mcgill.ca" target="_blank">minc-users@bic.mni.mcgill.ca</a>>><br>
>> Hello,<br>
>> A while back, we logged several critical dcm2mnc issues on<br>
>> GitHub. We are still experiencing those issues in several of our<br>
>> LORIS projects. I wanted to follow up with the MINC community<br>
>> regarding those issues to see if dcm2mnc is still supported and<br>
>> if there will be any developments regarding those issues.<br>
>> Here is the list of logged issues:<br>
>> <a href="https://github.com/BIC-MNI/minc-tools/issues/created_by/cmadjar" rel="noreferrer" target="_blank">https://github.com/BIC-MNI/minc-tools/issues/created_by/cmadjar</a><br>
>> <<a href="https://github.com/BIC-MNI/minc-tools/issues/created_by/cmadjar" rel="noreferrer" target="_blank">https://github.com/BIC-MNI/minc-tools/issues/created_by/cmadjar</a>><br>
>> As the imaging world progresses, we are encountering those<br>
>> problematic issues in more of our LORIS projects and we need to<br>
>> provide our users solutions regarding these issues. If there is<br>
>> no possibility to fix dcm2mnc, then we may have to consider<br>
>> moving away from MINC, which we would prefer avoiding for<br>
>> obvious reasons.<br>
>> Please, let us know your thoughts on this. Help regarding these<br>
>> issues would be greatly appreciated.<br>
>> Best regards,<br>
>> Cécile<br>
>> _______________________________________________<br>
>> MINC-development mailing list<br>
>> <a href="mailto:MINC-development@bic.mni.mcgill.ca" target="_blank">MINC-development@bic.mni.mcgill.ca</a><br>
>> <mailto:<a href="mailto:MINC-development@bic.mni.mcgill.ca" target="_blank">MINC-development@bic.mni.mcgill.ca</a>><br>
>> <a href="https://mailman.bic.mni.mcgill.ca/mailman/listinfo/minc-development" rel="noreferrer" target="_blank">https://mailman.bic.mni.mcgill.ca/mailman/listinfo/minc-development</a><br>
>> <<a href="https://mailman.bic.mni.mcgill.ca/mailman/listinfo/minc-development" rel="noreferrer" target="_blank">https://mailman.bic.mni.mcgill.ca/mailman/listinfo/minc-development</a>><br>
>> _______________________________________________<br>
>> MINC-development mailing list<br>
>> <a href="mailto:MINC-development@bic.mni.mcgill.ca" target="_blank">MINC-development@bic.mni.mcgill.ca</a><br>
>> <mailto:<a href="mailto:MINC-development@bic.mni.mcgill.ca" target="_blank">MINC-development@bic.mni.mcgill.ca</a>><br>
>> <a href="https://mailman.bic.mni.mcgill.ca/mailman/listinfo/minc-development" rel="noreferrer" target="_blank">https://mailman.bic.mni.mcgill.ca/mailman/listinfo/minc-development</a><br>
>> <<a href="https://mailman.bic.mni.mcgill.ca/mailman/listinfo/minc-development" rel="noreferrer" target="_blank">https://mailman.bic.mni.mcgill.ca/mailman/listinfo/minc-development</a>><br>
>> _______________________________________________<br>
>> MINC-development mailing list<br>
>> <a href="mailto:MINC-development@bic.mni.mcgill.ca" target="_blank">MINC-development@bic.mni.mcgill.ca</a><br>
>> <a href="https://mailman.bic.mni.mcgill.ca/mailman/listinfo/minc-development" rel="noreferrer" target="_blank">https://mailman.bic.mni.mcgill.ca/mailman/listinfo/minc-development</a><br>
> <br>
> _______________________________________________<br>
> MINC-development mailing list<br>
> <a href="mailto:MINC-development@bic.mni.mcgill.ca" target="_blank">MINC-development@bic.mni.mcgill.ca</a><br>
> <a href="https://mailman.bic.mni.mcgill.ca/mailman/listinfo/minc-development" rel="noreferrer" target="_blank">https://mailman.bic.mni.mcgill.ca/mailman/listinfo/minc-development</a><br>
<br>
<br>
_______________________________________________<br>
MINC-development mailing list<br>
<a href="mailto:MINC-development@bic.mni.mcgill.ca" target="_blank">MINC-development@bic.mni.mcgill.ca</a><br>
<a href="https://mailman.bic.mni.mcgill.ca/mailman/listinfo/minc-development" rel="noreferrer" target="_blank">https://mailman.bic.mni.mcgill.ca/mailman/listinfo/minc-development</a><br>
</blockquote></div><br clear="all"><div><br></div>-- <br><div dir="ltr" class="gmail_signature">Best regards,<br><br> Vladimir S. Fonov ~ vladimir <dot> fonov <at> gmail <dot> com</div>