[MINC-development] dcm2mnc issues

[Cecile Madjar]

Hi Vlad,

Definitely, I will copy sample datasets and let you know where they are once copied. Thank you!!

Cécile

> On May 7, 2021, at 10:36 AM, Vladimir S. Fonov <vladimir.fonov at gmail.com> wrote:
> 
> Hello,
> 
> 
> so the proposed change to the minc-tools is on github ( https://github.com/BIC-MNI/minc-tools/pull/113 ), but there is no DICOM files to actually test that it works.
> 
> So, as an interested party, perhaps Cecile Madjar can supply a set of DICOMs that can be used for testing?
> 
> 
> On 2021-04-30 10:02 a.m., Cecile Madjar wrote:
>> Hi JP,
>> This is great news! Thank you. Let me know once it is part of the MINC tools.
>> Is there a way to obtain the dcm2mnc binaries for Ubuntu and CentOS at the same time by any chance?
>> Thank you again,
>> Cécile
>> On Thu, Apr 29, 2021 at 1:05 PM Jean-Philippe Coutu <jp at biospective.com <mailto:jp at biospective.com>> wrote:
>>    Hi Cecile,
>>    We have been modifying dcm2mnc actively internally over the past
>>    four years without having the bandwidth to generate pull requests to
>>    the minctools github repository. I am preparing a (sizeable) pull
>>    request to the minctools github repository that includes all of our
>>    changes, which I believe from my experience is likely to fix at
>>    least two of the three issues you have opened.
>>    Best,
>>    JP
>>        From: *Cecile Madjar* <cecile.madjar at mcin.ca
>>        <mailto:cecile.madjar at mcin.ca>>
>>        Date: Fri, Apr 23, 2021 at 5:22 PM
>>        Subject: [MINC-development] dcm2mnc issues
>>        To: MINC development discussion & planning
>>        <minc-development at bic.mni.mcgill.ca
>>        <mailto:minc-development at bic.mni.mcgill.ca>>,
>>        <minc-users at bic.mni.mcgill.ca <mailto:minc-users at bic.mni.mcgill.ca>>
>>        Hello,
>>        A while back, we logged several critical dcm2mnc issues on
>>        GitHub. We are still experiencing those issues in several of our
>>        LORIS projects. I wanted to follow up with the MINC community
>>        regarding those issues to see if dcm2mnc is still supported and
>>        if there will be any developments regarding those issues.
>>        Here is the list of logged issues:
>>        https://github.com/BIC-MNI/minc-tools/issues/created_by/cmadjar
>>        <https://github.com/BIC-MNI/minc-tools/issues/created_by/cmadjar>
>>        As the imaging world progresses, we are encountering those
>>        problematic issues in more of our LORIS projects and we need to
>>        provide our users solutions regarding these issues. If there is
>>        no possibility to fix dcm2mnc, then we may have to consider
>>        moving away from MINC, which we would prefer avoiding for
>>        obvious reasons.
>>        Please, let us know your thoughts on this. Help regarding these
>>        issues would be greatly appreciated.
>>        Best regards,
>>        Cécile
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