[MINC-development] dcm2mnc issues

[Vladimir S. Fonov]

Hello,


so the proposed change to the minc-tools is on github ( 
https://github.com/BIC-MNI/minc-tools/pull/113 ), but there is no DICOM 
files to actually test that it works.

So, as an interested party, perhaps Cecile Madjar can supply a set of 
DICOMs that can be used for testing?


On 2021-04-30 10:02 a.m., Cecile Madjar wrote:
> Hi JP,
> 
> This is great news! Thank you. Let me know once it is part of the MINC 
> tools.
> 
> Is there a way to obtain the dcm2mnc binaries for Ubuntu and CentOS at 
> the same time by any chance?
> 
> Thank you again,
> 
> Cécile
> 
> On Thu, Apr 29, 2021 at 1:05 PM Jean-Philippe Coutu <jp at biospective.com 
> <mailto:jp at biospective.com>> wrote:
> 
>     Hi Cecile,
> 
>     We have been modifying dcm2mnc actively internally over the past
>     four years without having the bandwidth to generate pull requests to
>     the minctools github repository. I am preparing a (sizeable) pull
>     request to the minctools github repository that includes all of our
>     changes, which I believe from my experience is likely to fix at
>     least two of the three issues you have opened.
> 
>     Best,
>     JP
> 
>         From: *Cecile Madjar* <cecile.madjar at mcin.ca
>         <mailto:cecile.madjar at mcin.ca>>
>         Date: Fri, Apr 23, 2021 at 5:22 PM
>         Subject: [MINC-development] dcm2mnc issues
>         To: MINC development discussion & planning
>         <minc-development at bic.mni.mcgill.ca
>         <mailto:minc-development at bic.mni.mcgill.ca>>,
>         <minc-users at bic.mni.mcgill.ca <mailto:minc-users at bic.mni.mcgill.ca>>
> 
> 
>         Hello,
> 
>         A while back, we logged several critical dcm2mnc issues on
>         GitHub. We are still experiencing those issues in several of our
>         LORIS projects. I wanted to follow up with the MINC community
>         regarding those issues to see if dcm2mnc is still supported and
>         if there will be any developments regarding those issues.
> 
>         Here is the list of logged issues:
>         https://github.com/BIC-MNI/minc-tools/issues/created_by/cmadjar
>         <https://github.com/BIC-MNI/minc-tools/issues/created_by/cmadjar>
> 
>         As the imaging world progresses, we are encountering those
>         problematic issues in more of our LORIS projects and we need to
>         provide our users solutions regarding these issues. If there is
>         no possibility to fix dcm2mnc, then we may have to consider
>         moving away from MINC, which we would prefer avoiding for
>         obvious reasons.
> 
>         Please, let us know your thoughts on this. Help regarding these
>         issues would be greatly appreciated.
> 
>         Best regards,
> 
>         Cécile
> 
> 
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