[Loris-dev] Imaging Upload Pipeline Error

[Cecile Madjar]

Hi Barry,

I guess it could be permission issues where the DICOMs cannot be read for
some reason by the apache user but can be read by the user you are using to
run the script manually.

I cannot think of any other reason why it would not work via the apache
user when it works when you are logged in yourself as lorisadmin.

Can you check that the apache user has read/write access to the incoming
directory and the directories where the data will get processed (including
TMPDIR and /data/ directory tree).

Cécile

---------- Forwarded message ---------
From: Barry Tikalsky <tikal004 at umn.edu>
Date: Mon, Mar 13, 2023 at 11:20 AM
Subject: [Loris-dev] Imaging Upload Pipeline Error
To: <loris-dev at bic.mni.mcgill.ca>


Hello LORIS devs,

I am using the imaging uploader to test uploading DICOMs into LORIS.
I am able to upload DICOMs but the pipeline immediately stops at the
following error:

The ''PatientName'' DICOM field cannot be extracted from the DICOM file
/path/to/file.dcm

I then run the command from the docs
<https://github.com/aces/Loris-MRI/blob/main/docs/05-PipelineLaunchOptions.md#511-option-1>
and
it works perfectly!
How can I get this to run automatically?
The Patient's Name DICOM field matches the candidate/visit info.
I suspected Linux permissions issues, but haven't been able to make any
changes to them that worked. I am using CentOS 7

Thanks!

--

Barry Tikalsky
Research Professional | Developmental Cognition and Neuroimaging Labs |
Masonic Institute for the Developing Brain
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