[Loris-dev] [IPMSA] Remove MRI files from a project

Mon Mar 9 09:12:48 EDT 2020

Dear Loris DevTeam,

I finally upgraded LORIS to v21.0.0 so that we can delete images using the scripts from LORIS-MRI. Next step would be to upgrade LORIS-MRI to v21.0.0, I am currently running v18.0.0.

Given that I have made modification to the core of the library (MRI.pm) and created scripts for uploading masks and transformation that are working properly and might be impacted if I upgrade the code, would it be possible to “import” and use the script delete_imaging_upload.pl without upgrading LORIS-MRI?

Let me know if this is possible. I would prefer to keep the library as it is cause it’s working perfect for us right now.

Regards,
Alfredo.

On Mar 2, 2020, at 12:02 PM, Morales Pinzon, Alfredo <AMORALESPINZON at BWH.HARVARD.EDU<mailto:AMORALESPINZON at BWH.HARVARD.EDU>> wrote:

Hi Cécile,

I finally upgraded LORIS to v21.0.0 so that we can delete images using the scripts from LORIS-MRI. Next step would be to upgrade LORIS-MRI to v21.0.0, I am currently running v18.0.0.

Given that I have made modification to the core of the library (MRI.pm) and created scripts for uploading masks and transformation that are working properly and might be impacted if I upgrade the code, would it be possible to “import” and use the script delete_imaging_upload.pl<http://delete_imaging_upload.pl/> without upgrading LORIS-MRI?

Let me know if this is possible. I would prefer to keep the library as it is cause it’s working perfect for us right now.

Regards,
Alfredo.

On Feb 4, 2020, at 11:26 AM, Morales Pinzon, Alfredo <AMORALESPINZON at BWH.HARVARD.EDU<mailto:AMORALESPINZON at BWH.HARVARD.EDU>> wrote:

Hi Cécile,

Thank you for your answer. I will use it once some uploading processes are finished so that I can upgrade LORIS to the its last version where the script is available. I will tell you how it goes.

Best,
Alfredo.

On Feb 4, 2020, at 9:46 AM, Cecile Madjar <cecile.madjar at mcin.ca<mailto:cecile.madjar at mcin.ca>> wrote:

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Hi Alfredo,

Indeed, the delete_imaging_upload.pl<http://delete_imaging_upload.pl/> script was designed to properly remove imaging dataset without touching the other tables in the database. By defaults, the script will create a backup of the removed dataset (files + MySQL entries) which is always nice to have in case the delete script was run on a wrong dataset.

Run "delete_imaging_upload.pl<http://delete_imaging_upload.pl/> -h " to see the list of options that can be used.

Let me know if you have any questions.

Cécile

On Mon, Feb 3, 2020 at 6:37 PM Morales Pinzon, Alfredo <AMORALESPINZON at bwh.harvard.edu<mailto:AMORALESPINZON at bwh.harvard.edu>> wrote:
Hi Cecile,

In IPMSA we need to re-upload a whole study in terms of MRI images. Given that I already created all the centers, users in centers, candidates, and visits (clinical and mri), would it be possible to only remove the MRI images previously uploaded? Looking at the script delete_imaging_upload.pl<https://github.com/aces/Loris-MRI/blob/9fe2972c15e4ddb5da0914d751f9bdb74bf2d7f8/tools/delete_imaging_upload.pl> it seems to be possible (I can get all the Tarchive IDs assoicated) but I want to confirm before I move forward. Please let me know if this is possible.

Thank you for all your help.

Regards,
Alfredo.

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