[Loris-dev] [IPMSA] Error: The target directory does not contain a single DICOM file.

[Morales Pinzon, Alfredo]

Dear Cécile,

I checked a couple of cases having this issue and they have the dicom field 0020,0032. Here is an example using dcmdump:

(0020,0032) DS [-128.95269713082\-161.29539118652\87.7198252597444] #  50, 3 ImagePositionPatient

Does this look good? Are there other field that I should check?

Regards,
Alfredo.

________________________________
From: Cecile Madjar <cecile.madjar at mcin.ca>
Sent: Tuesday, April 9, 2019 10:05 AM
To: Morales Pinzon, Alfredo
Cc: loris-dev at bic.mni.mcgill.ca; Sridar Narayanan, Dr.; Rozie Arnaoutelis; Zografos Caramanos, Mr; Douglas Arnold, Dr.; Guttmann, Charles,M.D.
Subject: Re: [Loris-dev] [IPMSA] Error: The target directory does not contain a single DICOM file.


        External Email - Use Caution

Hi Alfredo,

I have a feeling you are encountering an issue that was fixed in release 20.2 of LORIS-MRI where DICOM files without the header (0020,0032) were automatically rejected by the script get_dicom_info.pl<http://get_dicom_info.pl> with the error message saying that the file is not a DICOM, while it is actually a DICOM...

If you don't wish to upgrade your LORIS instance to 20.2 right away, you can take a look at the following PR that solved the issue: https://github.com/aces/Loris-MRI/pull/365 to implement the fix.

Hope this helps! Let me know how it goes,

Cécile



On Mon, Apr 8, 2019 at 6:02 PM Morales Pinzon, Alfredo <AMORALESPINZON at bwh.harvard.edu<mailto:AMORALESPINZON at bwh.harvard.edu>> wrote:
Dear LoriDev team,

Out of 82 MRI sessions that I was uploading into LORIS, 15 could not be uploaded due to the following error:

---------------------------------------
Running now the following command: /AAA/loris_data/BBB/bin/mri/uploadNeuroDB/imaging_upload_file.pl<http://imaging_upload_file.pl> -profile prod -upload_id 20844 /AAA/ANOM/STUDYNAME//AAA10026_343633_w024.tar.gz -verbose

/AAA/loris_data/IPMSA/bin/mri/dicom-archive/dicomTar.pl /tmp/ImagingUpload-9-29-1gMub2 /AAA/loris_data/BBB/data/tarchive -clobber -database -profile prod -verbose
 Source: /tmp/ImagingUpload-9-29-1gMub2
Target: /AAA/loris_data/BBB/data/tarchive

Testing for database connectivity.
Database is available.

         The target directory does not contain a single DICOM file.

The dicomtar execution has failed
---------------------------------------

I checked the file /AAA/ANOM/STUDYNAME//AAA10026_343633_w024.tar.gz and it has dicom files in it. Is there something a need to double check?

Best regards,
Alfredo.
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