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Dear Cécile,</div>
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I checked a couple of cases having this issue and they have the dicom field 0020,0032. Here is an example using dcmdump:</div>
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(0020,0032) DS [-128.95269713082\-161.29539118652\87.7198252597444] # 50, 3 ImagePositionPatient<br>
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Does this look good? Are there other field that I should check?</div>
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Regards,</div>
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Alfredo.</div>
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<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> Cecile Madjar <cecile.madjar@mcin.ca><br>
<b>Sent:</b> Tuesday, April 9, 2019 10:05 AM<br>
<b>To:</b> Morales Pinzon, Alfredo<br>
<b>Cc:</b> loris-dev@bic.mni.mcgill.ca; Sridar Narayanan, Dr.; Rozie Arnaoutelis; Zografos Caramanos, Mr; Douglas Arnold, Dr.; Guttmann, Charles,M.D.<br>
<b>Subject:</b> Re: [Loris-dev] [IPMSA] Error: The target directory does not contain a single DICOM file.</font>
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<p><span style="padding:3px 10px; border-radius:5px; color:#ffffff; font-weight:bold; display:inline-block; background-color:#ff0000"> External Email - Use Caution </span></p>
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<div dir="ltr">Hi Alfredo,
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<div>I have a feeling you are encountering an issue that was fixed in release 20.2 of LORIS-MRI where DICOM files without the header (0020,0032) were automatically rejected by the script
<a href="http://get_dicom_info.pl">get_dicom_info.pl</a> with the error message saying that the file is not a DICOM, while it is actually a DICOM...</div>
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<div>If you don't wish to upgrade your LORIS instance to 20.2 right away, you can take a look at the following PR that solved the issue: <a href="https://github.com/aces/Loris-MRI/pull/365">https://github.com/aces/Loris-MRI/pull/365</a> to implement the fix.</div>
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<div>Hope this helps! Let me know how it goes,</div>
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<div>Cécile</div>
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<div dir="ltr" class="x_gmail_attr">On Mon, Apr 8, 2019 at 6:02 PM Morales Pinzon, Alfredo <<a href="mailto:AMORALESPINZON@bwh.harvard.edu">AMORALESPINZON@bwh.harvard.edu</a>> wrote:<br>
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Dear LoriDev team,</div>
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Out of 82 MRI sessions that I was uploading into LORIS, 15 could not be uploaded due to the following error:</div>
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<span>Running now the following command: /AAA/loris_data/BBB/bin/mri/uploadNeuroDB/<a href="http://imaging_upload_file.pl" target="_blank">imaging_upload_file.pl</a> -profile prod -upload_id 20844 /AAA/ANOM/STUDYNAME//AAA10026_343633_w024.tar.gz -verbose<br>
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<div>/AAA/loris_data/IPMSA/bin/mri/dicom-archive/dicomTar.pl /tmp/ImagingUpload-9-29-1gMub2 /AAA/loris_data/BBB/data/tarchive -clobber -database -profile prod -verbose<br>
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<div> Source: /tmp/ImagingUpload-9-29-1gMub2<br>
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<div>Target: /AAA/loris_data/BBB/data/tarchive<br>
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<div>Testing for database connectivity.<br>
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<div>Database is available.<br>
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<div> The target directory does not contain a single DICOM file.<br>
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<span>The dicomtar execution has failed</span><br>
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<span style="font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255); display:inline"><br>
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<span style="font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255); display:inline">I checked the file <span style="font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255); display:inline">/AAA/ANOM/STUDYNAME//AAA10026_343633_w024.tar.gz
and it has dicom files in it. Is there something a need to double check?</span></span></div>
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<span style="font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255); display:inline"><span style="font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255); display:inline"><br>
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<span style="font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255); display:inline"><span style="font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255); display:inline">Best regards,</span></span></div>
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<span style="font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255); display:inline"><span style="font-family:Calibri,Arial,Helvetica,sans-serif; background-color:rgb(255,255,255); display:inline">Alfredo.</span></span></div>
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