[Loris-dev] [IPMSA] Error: The target directory does not contain a single DICOM file.

[Cecile Madjar]

Hi again,

Could we look into this issue together on Tuesday too? Not entirely sure
why you get this error but we'll find out!!

Thanks!

Cécile

On Fri, Apr 12, 2019 at 11:55 AM Morales Pinzon, Alfredo <
AMORALESPINZON at bwh.harvard.edu> wrote:

> Dear Cécile,
>
> I checked a couple of cases having this issue and they have the dicom
> field 0020,0032. Here is an example using dcmdump:
>
> (0020,0032) DS [-128.95269713082\-161.29539118652\87.7198252597444] #  50,
> 3 ImagePositionPatient
>
> Does this look good? Are there other field that I should check?
>
> Regards,
> Alfredo.
>
> ------------------------------
> *From:* Cecile Madjar <cecile.madjar at mcin.ca>
> *Sent:* Tuesday, April 9, 2019 10:05 AM
> *To:* Morales Pinzon, Alfredo
> *Cc:* loris-dev at bic.mni.mcgill.ca; Sridar Narayanan, Dr.; Rozie
> Arnaoutelis; Zografos Caramanos, Mr; Douglas Arnold, Dr.; Guttmann,
> Charles,M.D.
> *Subject:* Re: [Loris-dev] [IPMSA] Error: The target directory does not
> contain a single DICOM file.
>
>
>         External Email - Use Caution
>
> Hi Alfredo,
>
> I have a feeling you are encountering an issue that was fixed in release
> 20.2 of LORIS-MRI where DICOM files without the header (0020,0032) were
> automatically rejected by the script get_dicom_info.pl with the error
> message saying that the file is not a DICOM, while it is actually a DICOM...
>
> If you don't wish to upgrade your LORIS instance to 20.2 right away, you
> can take a look at the following PR that solved the issue:
> https://github.com/aces/Loris-MRI/pull/365 to implement the fix.
>
> Hope this helps! Let me know how it goes,
>
> Cécile
>
>
>
> On Mon, Apr 8, 2019 at 6:02 PM Morales Pinzon, Alfredo <
> AMORALESPINZON at bwh.harvard.edu> wrote:
>
> Dear LoriDev team,
>
> Out of 82 MRI sessions that I was uploading into LORIS, 15 could not be
> uploaded due to the following error:
>
> ---------------------------------------
> Running now the following command:
> /AAA/loris_data/BBB/bin/mri/uploadNeuroDB/imaging_upload_file.pl -profile
> prod -upload_id 20844 /AAA/ANOM/STUDYNAME//AAA10026_343633_w024.tar.gz
> -verbose
>
> /AAA/loris_data/IPMSA/bin/mri/dicom-archive/dicomTar.pl
> /tmp/ImagingUpload-9-29-1gMub2 /AAA/loris_data/BBB/data/tarchive -clobber
> -database -profile prod -verbose
>  Source: /tmp/ImagingUpload-9-29-1gMub2
> Target: /AAA/loris_data/BBB/data/tarchive
>
> Testing for database connectivity.
> Database is available.
>
>          The target directory does not contain a single DICOM file.
>
> The dicomtar execution has failed
> ---------------------------------------
>
> I checked the file /AAA/ANOM/STUDYNAME//AAA10026_343633_w024.tar.gz and
> it has dicom files in it. Is there something a need to double check?
>
> Best regards,
> Alfredo.
> _______________________________________________
> Loris-dev mailing list
> Loris-dev at bic.mni.mcgill.ca
> https://mailman.bic.mni.mcgill.ca/mailman/listinfo/loris-dev
>
> The information in this e-mail is intended only for the person to whom it
> is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mailman.bic.mni.mcgill.ca/pipermail/loris-dev/attachments/20190412/4b2de57b/attachment-0001.html>