[MINC-users] mincbeast question

[Divya Bolar]

Thank you Simon!  Very useful, I did not see that! Div

On May 22, 2017, at 8:10 AM, Simon Eskildsen <eskild at gmail.com> wrote:

> Did you run beast_normalize on your files before running mincbeast?
> You can find an excellent introduction to BEaST here:
> http://rstudio-pubs-static.s3.amazonaws.com/8431_d05daa5d49aa4cada417b6afc8ffd295.html
> 
> Simon
> 
> On Fri, May 19, 2017 at 6:10 PM, Divya Bolar <dbolar at nmr.mgh.harvard.edu>
> wrote:
> 
>> Hi all!
>> 
>> I have a pretty basic question re: mincbeast; I am just trying to input a
>> minc file and get the brain extracted output (with the same resolution etc).
>> 
>> I've tried various options, e.g.:
>> mincbeast /opt/minc/share/beast-library-1.1 ./test.mnc test2.mnc
>> and
>> mincbeast  -no_mask /opt/minc/share/beast-library-1.1
>> test_forMincbeast.mnc output.mnc
>> and
>> mincbeast  -same_resolution /opt/minc/share/beast-library-1.1
>> test_forMincbeast.mnc output.mnc
>> 
>> I always get the following error:
>> ERROR! Mask dimension does not match image dimension!
>> 
>> Any suggestions?
>> 
>> Thanks so much!
>> Div
>> 
>> P.S.  I have a small example data set (100K); can send personally, but I
>> think is getting blocked by user list.
>> 
>> 
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