[MINC-users] minc tool to extract voxel values within a mask?

[Gabriel A. Devenyi]

That's perfect, thanks!

--
Gabriel A. Devenyi B.Eng. Ph.D.
Research Computing Associate
Computational Brain Anatomy Laboratory
Cerebral Imaging Center
Douglas Mental Health University Institute
McGill University
t: 514.761.6131x4781
e: gabriel.devenyi at mcgill.ca

On Wed, Feb 1, 2017 at 8:33 PM, Andrew Janke <a.janke at gmail.com> wrote:

> Hi Gabriel,
>
> Take a look at mincsample. I wrote it around this purpose.
>
> It also does random sampling of the area via the Mersene Twister algorithm.
>
>
> a
>
>
> On 2 February 2017 at 10:10, Gabriel A. Devenyi
> <gabriel.devenyi at mcgill.ca> wrote:
> > Hi all,
> >
> > I have a user asking about extracting raw intensity values from a MINC
> > image, from a region defined by a mask (label file, specific bin value).
> >
> > The closest thing I can find is mincextract but it doesn't have mask
> > support.
> >
> > Does anyone know of a script/hack to extract values like this?
> >
> > Thanks!
> >
> > --
> > Gabriel A. Devenyi B.Eng. Ph.D.
> > Research Computing Associate
> > Computational Brain Anatomy Laboratory
> > Cerebral Imaging Center
> > Douglas Mental Health University Institute
> > McGill University
> > t: 514.761.6131x4781
> > e: gabriel.devenyi at mcgill.ca
> > _______________________________________________
> > MINC-users at bic.mni.mcgill.ca
> > http://www.bic.mni.mcgill.ca/mailman/listinfo/minc-users
> _______________________________________________
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>